Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0194 ATGGCAGATCTTGCTAGCTTTGGGAGTCATGAGCGTGATGTTGAGCAAGCATTCATTACTTTAAAAAAGGGCACTCAGTTAGTGAAGTATTGTCGAAAAGGGAAGCCAAAATTTTGTTCGTTCAGGCTCTCATCGGATGAAACAAAATTGATTTGGATTTCTCATGGAAAGGAAAAGAATCTGAAATTGTCAGCTGTTTCACACATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGCCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAAAGGGGGGAACGATCACTTGATCTGATTTGCAAGGACCAAGCTGAGGTAGAGGTGTGGTTTTCAAGCCTCAAGGCATTAATTTCCCCTGGAGAGCGTTTGAGGCGTGGAATAAGTGATTTAACCAATGAGAGTGTTGACTTAGTTTCAAATGATCGTCCTTACGCTGGAACACTAGAGTTTGCATCAAACGTTGCCCGCGGAAGGTTTTCTTTTGAATCGGTATCTCATGAATCCACATCATCCTGGTCAAGATCAGAGACAAACATGCCAATAAGGACAAGTTGTGGAGATGGTTCTCGTGTTAGTGTATCAAGTATTAGCTACTCAAGTAGTGTAGGATCAGTAATAATAGATGACATAGAATCTCTAGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGATGGATTGGGGGGGAGTCAAACCTCTTGTAACAAGACAGATGTGCTGACTCCTAAGCCATTGGAGTCTAATGTTGTTCTTGATGTTCATCAGATTGGCCCCGGTGTGCGCCACATTGCTCTAGTCACAAGGCAAGGAGAGGTTTTCTCTTGGGGAGAGGACTCTGGTGGAAGACTTGGTCATGGCTTTGAAAAAGATTTTGGCAAACCTCATCTTGTGGAGTCCCTGGCAATTACCAATGTGACTCATGTTTCATGTGGCGAATATCATTCGTGTGCTGTGTCTACATCCGGTGACCTATTCACCTGGGGCGACGGTACACACTGTGCAGGACTTCTTGGTCATGGCACTACTGTTAGCTACTGGATTCCGAAGAGGGTTAGTGGACCTTTGGAGGGGCTTCAGGTTGTGTCTGTAGCATGTGGCACGTGGCATTCAGCATTAGCAACCTCAAATGGGAAGTTGTTTACCTTTGGTGATGGAAGATTTGGTGTATTAGGCCATGGAGATAGAGAGAGTGTGTCATATCCAAAGGAGGTACAGTTATTCGTTGGACACAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACACGGCAGCCATCATAGAGGTTATTGATCTGTCTAGTTCAAATACTTCAACCAAGAAGCTCTTCACATGGGGTGATGGTGACCAATATCGTTTGGGACATGTTAACAAGGAAACTTGCCTTCAACCAACTTGTGTAGCCGCGGTTGCTGAGTATAACTTTCAGCAGGTTGCATGTGGCTACACTTTGACTGTTGCACTCACTGCTTCTGGTCATGTTTTTTCTATGGGAGGCACAGCATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAATGCCAATTCTAGTCAGAGATAAGTTAGTAGGAGAGTTTGTGGAGGAAATATCATGTGGTGCGAATCATGTTGCTGTTTTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGACTAGGACATGGAGATACAGAAGACCAGAAATCTCCAACATTGGTGGAAGCCTTGAAAGACAGACATGTTAAGAACATCTCATGTGGCTCCACCTTTACATCTTGCATATGCCTTCACAAATGGGTTTCTGGAGTTGACCAATCTGCGTGCTCTGATTGTCGACAACCATTTGGTTTTACACGAAAAAGGCACAATTGCTATCATTGTGGATTGGTGTATTGCCATCCTTGTAGCTCAAAAAAGGCTTCAAAAGCAGCACTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATACTAAGCTAAAAGGTTCTGATAGTGCTTCCACTTCCAATTTCAATAGAGACATTACTCGTCCTTCTAGTTCCACATATGGAAGGGATAGTTACCAGGGAGAAGTTAAGTCTTCAAGAGTTCTCTTGCCTCCCACCACAGAACCAGTAAAATACCTTCAGATTAGGACTGGTATGACTGGAAGTACACATGACTCTTCTTCCATAGTCCGAGCTTCTCAAGTTCCTACGAATTTACAATTGAAAGATCTTGCATTTCCAATTTCATTGGGTTCTACACAGAATGTTTACAAGCCTGTTATACAACCAAGTCAACCTCCAACTCCAACAACACCAGCCACTCCAATGTCTATGTCACCATATGCTAGAAGACCACCAAGCCCACCGCGTTCTTCCTCCCCTGGATTTTCAAGAAGCGTTATTGATAATTTAAGGAAGAAAAATGACCATTTGAATCAAGAAGTCTCAAAATTGCAAACAAAAAATAAAAATTTGAAGCAGAAGAGTGACATGCAAGATACGAAGATTCAGAAGCTTCAGAAAAACATTGAAGAAGCCATGTCGCAAGTTGAAGAGGAATCTTCTAAGCTTAGAGAAGCAAAATACTTTATTAAGTCCTTCACAGATAAGTTGCCACCTAAGATTCCTGACATTGAAACCTTGAAAACTATGCATGCTCAAGCTGAAGAGTTTCTTCATGAAGAAAAAGAATTTGAATCTTCTTCTACTGCACTGAGCCTTGACTCTTCAAAACTCCAAGAGCAAAGAATGGAAGGAAATGGTGTTCCATCTATAGATGCAGAAAATATTCTTGAAGAAAGCAGCAACTCATCTGTATCTAATCAAGTGGTGACTTCGCTCAGCTCAGGAAATGGTTCAAAATTACCTGAGACAGAAGAAGAAAAAACAGTCATTGAACAATTTGAGCAAGGTGTTTATGTCACGCTCATAGTACTACCTAGTGGTTGCAAACTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAATGAGCATCAAGCAGCAGAGTGGTGGAACCAAAACAAAGATAGGTTGCTTAGTAAATACGATCTAGCAACCACAAAAAATGAAATGACTGGATCATCTAATACTCCTCCACAAGCTGAAGAGAATAGTGAGGCATGA 3135 0.4195 MADLASFGSHERDVEQAFITLKKGTQLVKYCRKGKPKFCSFRLSSDETKLIWISHGKEKNLKLSAVSHIIPGQRTAVFRRYLRPEKDYLSFSLIYKRGERSLDLICKDQAEVEVWFSSLKALISPGERLRRGISDLTNESVDLVSNDRPYAGTLEFASNVARGRFSFESVSHESTSSWSRSETNMPIRTSCGDGSRVSVSSISYSSSVGSVIIDDIESLGDVYIWGEVWADDGLGGSQTSCNKTDVLTPKPLESNVVLDVHQIGPGVRHIALVTRQGEVFSWGEDSGGRLGHGFEKDFGKPHLVESLAITNVTHVSCGEYHSCAVSTSGDLFTWGDGTHCAGLLGHGTTVSYWIPKRVSGPLEGLQVVSVACGTWHSALATSNGKLFTFGDGRFGVLGHGDRESVSYPKEVQLFVGHKAIKVACGVWHTAAIIEVIDLSSSNTSTKKLFTWGDGDQYRLGHVNKETCLQPTCVAAVAEYNFQQVACGYTLTVALTASGHVFSMGGTAYGQLGNPNSDGKMPILVRDKLVGEFVEEISCGANHVAVLTSRSELYTWGRGANGRLGHGDTEDQKSPTLVEALKDRHVKNISCGSTFTSCICLHKWVSGVDQSACSDCRQPFGFTRKRHNCYHCGLVYCHPCSSKKASKAALAPTPSKPHRVCDACYTKLKGSDSASTSNFNRDITRPSSSTYGRDSYQGEVKSSRVLLPPTTEPVKYLQIRTGMTGSTHDSSSIVRASQVPTNLQLKDLAFPISLGSTQNVYKPVIQPSQPPTPTTPATPMSMSPYARRPPSPPRSSSPGFSRSVIDNLRKKNDHLNQEVSKLQTKNKNLKQKSDMQDTKIQKLQKNIEEAMSQVEEESSKLREAKYFIKSFTDKLPPKIPDIETLKTMHAQAEEFLHEEKEFESSSTALSLDSSKLQEQRMEGNGVPSIDAENILEESSNSSVSNQVVTSLSSGNGSKLPETEEEKTVIEQFEQGVYVTLIVLPSGCKLFKRIRFSKRRFNEHQAAEWWNQNKDRLLSKYDLATTKNEMTGSSNTPPQAEENSEA 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0194 1044 Coils Coil 804 863 - -
Aed8g0194 1044 MobiDBLite consensus disorder prediction 936 961 - -
Aed8g0194 1044 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 12 1024 - -
Aed8g0194 1044 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 435 IPR000408 -
Aed8g0194 1044 SUPERFAMILY RCC1/BLIP-II 218 603 IPR009091 -
Aed8g0194 1044 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 606 668 IPR017455 -
Aed8g0194 1044 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 498 549 IPR000408 -
Aed8g0194 1044 MobiDBLite consensus disorder prediction 765 795 - -
Aed8g0194 1044 CDD PH_PLC_plant-like 12 124 - -
Aed8g0194 1044 SMART fyve_4 600 669 IPR000306 GO:0046872
Aed8g0194 1044 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 220 276 IPR000408 -
Aed8g0194 1044 MobiDBLite consensus disorder prediction 936 957 - -
Aed8g0194 1044 Pfam FYVE zinc finger 602 667 IPR000306 GO:0046872
Aed8g0194 1044 MobiDBLite consensus disorder prediction 673 696 - -
Aed8g0194 1044 ProSiteProfiles BRX domain profile. 965 1020 IPR013591 -
Aed8g0194 1044 Gene3D - 157 340 IPR009091 -
Aed8g0194 1044 Gene3D - 341 437 IPR009091 -
Aed8g0194 1044 MobiDBLite consensus disorder prediction 761 802 - -
Aed8g0194 1044 Gene3D - 13 130 IPR011993 -
Aed8g0194 1044 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Aed8g0194 1044 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Aed8g0194 1044 Gene3D - 438 608 IPR009091 -
Aed8g0194 1044 MobiDBLite consensus disorder prediction 673 699 - -
Aed8g0194 1044 Pfam Regulator of chromosome condensation (RCC1) repeat 383 432 IPR000408 -
Aed8g0194 1044 Pfam Regulator of chromosome condensation (RCC1) repeat 328 379 IPR000408 -
Aed8g0194 1044 Pfam Regulator of chromosome condensation (RCC1) repeat 497 546 IPR000408 -
Aed8g0194 1044 Pfam Regulator of chromosome condensation (RCC1) repeat 551 598 IPR000408 -
Aed8g0194 1044 Pfam Regulator of chromosome condensation (RCC1) repeat 277 325 IPR000408 -
Aed8g0194 1044 Pfam Regulator of chromosome condensation (RCC1) repeat 448 494 IPR000408 -
Aed8g0194 1044 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 277 328 IPR000408 -
Aed8g0194 1044 SUPERFAMILY PH domain-like 13 123 - -
Aed8g0194 1044 MobiDBLite consensus disorder prediction 1022 1044 - -
Aed8g0194 1044 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 12 1024 - -
Aed8g0194 1044 Pfam Transcription factor regulating root and shoot growth via Pin3 965 1019 IPR013591 -
Aed8g0194 1044 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Aed8g0194 1044 PRINTS Chromosome condensation regulator RCC1 signature 329 345 IPR000408 -
Aed8g0194 1044 PRINTS Chromosome condensation regulator RCC1 signature 487 505 IPR000408 -
Aed8g0194 1044 PRINTS Chromosome condensation regulator RCC1 signature 545 566 IPR000408 -
Aed8g0194 1044 PRINTS Chromosome condensation regulator RCC1 signature 279 295 IPR000408 -
Aed8g0194 1044 PRINTS Chromosome condensation regulator RCC1 signature 386 400 IPR000408 -
Aed8g0194 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 679 IPR013083 -
Aed8g0194 1044 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 497 IPR000408 -
Aed8g0194 1044 SUPERFAMILY FYVE/PHD zinc finger 602 672 IPR011011 -
Aed8g0194 1044 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 383 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0194 Aed-Chr8 1674174 1679532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0194 936 1021 Major Intrinsic Protein MIP AT1G31880 32.558 4.31e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0194 - - gmx:100812689 1646.33