LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g0191	ATGGCTCCGAAGAAAGGTGCAAAAGGAGCAGTGGTAGCAGCGAAGAAGAAGGTGCAGCAGGAGAAGGTGACGAACCCGCTGTTCGAGAAGCGTCCGAAGCAGTTCGGGATCGGAGGAGCTATCCCTCCGAAGCGTGACCTGACTCGGTTCGTGAAATGGCCGAAGAATGTCCAAATCCAACGCAAGAAGCGCATCCTCAAGCAGAGGCTCAAGGTCCCTCCCGCACTCAACCAGTTCACCAAAACCATCGACAAGAATCTCGCAACGAATCTGTTTAAGATGTTGTTGAAGTACAGGCCGGAGGATAAGGCGGAGAAGAAGGAGCGGCTGTTGAAGAGGGCTCAGTCCGAAGCTGATGGGAAGACTGTTGAAACCAAGAAGCCTATTGTCGTCAAATACGGTCTCAACCATGTTACCTACCTCATTGAGCAGAACAAGGCACAATTGGTTGTTATTGCTCATGATGTTGACCCAATCGAGCTGGTAGTCTGGCTTCCAGCGTTGTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAAGCACGTTTGGGGACGATTGTCCACAAGAAAACTGCTTCAGTTTTGTGCTTGACCACAGTCAAGAATGAAGACAAGATGGAGTTCAGCAGAATCCTAGAAGCTATTAAGGCAAACTTCAATGACAAGTATGATGAATACAGAAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCTAAGACCAAGGCCAAGGAGAGACTCATTGCCAAGGAAGCAGCCCAAAGAATGAACTAG	786	0.4898	MAPKKGAKGAVVAAKKKVQQEKVTNPLFEKRPKQFGIGGAIPPKRDLTRFVKWPKNVQIQRKKRILKQRLKVPPALNQFTKTIDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQSEADGKTVETKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMN	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g0191	261	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	2	259	-	-
	Aed8g0191	261	Gene3D	-	53	236	IPR029064	-
	Aed8g0191	261	SUPERFAMILY	L30e-like	91	232	IPR029064	-
	Aed8g0191	261	PANTHER	BNAA03G47020D PROTEIN	2	259	-	-
	Aed8g0191	261	Coils	Coil	104	124	-	-
	Aed8g0191	261	ProSitePatterns	Ribosomal protein L7Ae signature.	169	186	IPR004037	GO:0042254\|GO:1990904
	Aed8g0191	261	PRINTS	Ribosomal protein L7A/RS6 family signature	176	190	IPR018492	-
	Aed8g0191	261	PRINTS	Ribosomal protein L7A/RS6 family signature	166	176	IPR018492	-
	Aed8g0191	261	PRINTS	Ribosomal protein L7A/RS6 family signature	131	145	IPR018492	-
	Aed8g0191	261	PRINTS	Ribosomal protein L7A/RS6 family signature	150	163	IPR018492	-
	Aed8g0191	261	PRINTS	Ribosomal protein L7A family signature	49	66	IPR001921	-
	Aed8g0191	261	PRINTS	Ribosomal protein L7A family signature	93	106	IPR001921	-
	Aed8g0191	261	PRINTS	Ribosomal protein L7A family signature	32	49	IPR001921	-
	Aed8g0191	261	PRINTS	Ribosomal protein L7A family signature	69	88	IPR001921	-
	Aed8g0191	261	PRINTS	Ribosomal protein L7A family signature	220	240	IPR001921	-
	Aed8g0191	261	PRINTS	Ribosomal protein L7A family signature	127	147	IPR001921	-
	Aed8g0191	261	PRINTS	Ribosomal protein L7A family signature	188	212	IPR001921	-
	Aed8g0191	261	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	121	209	IPR004038	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g0191	Aed-Chr8	1655666	1657573	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g0191	1	261	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	84.291	3.42e-166	458

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g0191	K02936		-	gmx:100797399	474.937