Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0180 ATGGCAGAGACGCAAGGAGGTTCAGGTTCGGAGATATCTCTGAAGGATCAGGGCAACGACTTTTTCAAGTCAGGAAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAGAAAGACCCTTCTAACCCTACTCTCTATAGTAATCGTGCTGCAGCATTACTACAATTGGATAAACTTAATAAAGCTCTAGATGATGCAGAAATGACAATCAAATTAAAACCCCAATGGGAAAAGGGATATTTCAGAAAGGGAAGCATATTAGAGGCCATGAAACGATATGATGATGCTTTAGCTGCCTTTCAGATAGCATTGCAGTATAACCCACAAAGTCAAGAAGTATCAAAAAAGATAAAGAAGATAAACCAACTGGTGAAAGATAGCAAGCGAGCTCAAGAAGTGGAGAATATGAGATCCAATGTTGACATGGCCAAACATTTAGATCTATTTAAATCTGAAATGGCCTTTGAATCACCACATACACATGGCAACTGCTTTTCATTTCTTAGGCAGTATGCTGAGGAGTCTTTCTCCAAAGCAGCCTGCTTGCTAACTCCCAAAAGCATCATTGCTTATCCACAGGTCTGGAAGGGCCAAGGATCAAGAAAGTGGAAACATGCCCAGAATGATGGTTTCTTTGTTCAATTTGAGTCACCTTCCCTGCGAAAGCTGTGGTTTATACCTAGTTCGAATGAAAAGGGACAGACCTTGTGCAGGGATCCAGATGTTTTGGACATTGGTGCTCATGAAGTTCTTCCCCGGTTATTTAAAGAAGACTAG 783 0.4138 MAETQGGSGSEISLKDQGNDFFKSGKYLKAAALYTQAIKKDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNPQSQEVSKKIKKINQLVKDSKRAQEVENMRSNVDMAKHLDLFKSEMAFESPHTHGNCFSFLRQYAEESFSKAACLLTPKSIIAYPQVWKGQGSRKWKHAQNDGFFVQFESPSLRKLWFIPSSNEKGQTLCRDPDVLDIGAHEVLPRLFKED 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0180 260 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Aed8g0180 260 SMART tpr_5 11 44 IPR019734 GO:0005515
Aed8g0180 260 SMART tpr_5 45 78 IPR019734 GO:0005515
Aed8g0180 260 SMART tpr_5 79 112 IPR019734 GO:0005515
Aed8g0180 260 Coils Coil 51 71 - -
Aed8g0180 260 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Aed8g0180 260 PANTHER STRESS-INDUCED-PHOSPHOPROTEIN 1 13 259 - -
Aed8g0180 260 Pfam TPR repeat 18 58 - -
Aed8g0180 260 Pfam Tetratricopeptide repeat 80 111 IPR013105 -
Aed8g0180 260 PANTHER TPR REPEAT CONTAINING PROTEIN 13 259 IPR045248 GO:0006457|GO:0030544|GO:0051879
Aed8g0180 260 Gene3D Tetratricopeptide repeat domain 12 125 IPR011990 GO:0005515
Aed8g0180 260 SUPERFAMILY TPR-like 14 122 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0180 14 162 U-box Gene Family AT3G07370 22.699 2.44e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0180 - - psom:113357748 353.214