Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0150 ATGGTTGGATTGGAACTCATACCCATGGGTAGAATATTGACTGTTCTAACCAGTCAGGTTGTGAAAACAGCTAATGCAGCAATCGATGTTGTTGATAAAGAAAGTTTCAAGGTCCTTTCAAAACACCTGCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTGAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTCAAAAAGGCAAATAATCTGGTTGAGAAGTACAGGAACCGTGGCCGCTTCTACCTGCTGGTGAGGTGCAGATACATAGGCAAGGAAGTTGAACAAGTCACAAGGGATATTGGAAGGTCTCTGGCTGCACTGTCCATTGCAAACACTGAAGTCCTATCAAGAATTTCTGATCAGGTTAACAGGTTACAGAATGAAATGCAAACAGTGGAGTTTGAGGCTTCACAATATCAGCTTCAAATTGTTGACAAGTTGAACCATGGAATAAGGGAGCAGAAACTTGATCAGGCATTTGCAAATGACATGCTTGAGGAAATAGCAAGGGCAATTGGGGTGCCAGTGGAGCCTTTAGAGATAAGCAAAGAGCTAGCCAGCATTAGGCAGGAAAGGGAAGAAGCAGCCAGCAGGAAAGAAAGCCCTGACTTTATTTTCTTGGAACAGATCATTGAGCTACTATCGCGAGCTGATGCTGCAAGGGATTATGAACAAGTTAAGAAGCAATACTTTAAAAGGGTTCAGGTAATTGAGAGATATGAATCAAGGGAAAGATATATCAGGCCACTTAATTCTTTCCTCTGTCCCATAACTGAAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGGTCAGCCATTGAAGCTTGGTTTGATGATGGAAACAGGACTGACCCAGAAACAAAAGAGGTTCTTGAAGATACTACCTTGAGATCAAATGTTCGATTAAGAGAATCCATAGAAGAGTGGAGAGAAGTTAATTACTGCTTTGGAATAAGGTCTATCAGGGAAAGCCTATTATCCAATTCTGACTTATTAGTGCAAGAATCTTTGAGCCAAATTCAGGCTCTCATAAGAGAGAATTCCATTAACAAGGATTGGATTACTATAGGAGAGCTTACTGATATTATTATCTCTATCCTTGGAGAATCTGATTCCAGAGATGTGAAGATGAAGATCTTGATTACTTTGAAGGATGCTGTAGAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGTTGGTATCACATTATTTCCTGCTTAGGGAGTGACTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTGCTTCAAGACCTATCTGGTTGGAATAAAAGTTTCTGCAAAAAACTCTCTGAGCATCCCAGTGCAATTTCTTACCTCATTACTCTTCTAAAAGGACCTGAAAGTGATCCAGCTGGGGTTTCAGAAAAAATTTTGATGGAGCTTTTTGAAATAGATGAGGAAAACATTTCAGATGCTGCAAAGTTTGGCTGGTATAAACCGCTTATTGATCAAATGATTCAAGGATCAGAGTCTTCAAGAATGTCAATGGCAAAAACCATAGTTAATTTGGAGTTGAAAGATTTGAACTTGAAACACCTTGGCGAGCTAGGAGTTATGCTCCCTTTGCTAGAAATGCTATCCGGCAGCATTGAATCTAAAGAACTATCATTGTCAGCGCTGGTTAAACTAGCAAGATTACATGCCAACAAGGGGATTATTGCAAAATGTGGAGGTGTGCCTCTTGTTGTAGATTTAATGTTCTCTTGCAGGATGCGGTCATTCATTACCATTAAATGTTGTGAAATCCTTGAGAAGCTTGCTTCAGATGACGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATAACATCATCACTAATTTGCTAGCTCTAATGCAGAGTCTGAGCTCAGTTCACTACCGAAAGCCTGCATTACATGCTCTTCTTAGCATTTGCAAGTTTGAGACTGGTTTAGTTAAGAAGGCGGTTCTGGCAGCCAATGGTGTATCTCTAATCCTCCCCCTCCTTGATGATTCTGACTCTGAAATCAGGGAAACTGCCATAAATCTTCTCTTTCTTTTCTCCCAACAGGAACCAGAAGGAGTAGTTGAATACCTCTTCAGGCCAAGAAGACTAGAAGCATTAGTCGGGTTTCTTGAGAATGATGACAATGATGATGTGCAAATGGCTGCTGCTGGTTTACTAGCCAACCTTCCAAAATCAGAACGAGAACTCACTATGAAGTTGATTGACTTGGGAGGCCTTGATGCAATCATAAGCATTTTGAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCCCTCTTCAGGTTCACAGACCCCACAAATATTGAGTCACAGCATGATTTGGTTAAACGAGGAATATATCCTTTGCTTGTAAATTTTCTCAACACCGGTTCAGTAACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTGTCTATGAGCACTCCAAAGCTTGCAGCTGTTTCCAAATCAAGTGGTTGCAGTTGCACTCCTTGGTGGTGTTTTAGTTTTAGATCATCAAAAGTCCCTTTATGTTCAGCACATGGGAGTGTATGCAATGTGAATACCACATTTTGTCTGTTGGAAGCAAATTCTTTGCATGGCTTGATAAGGCTGTTGCATGGAGAGGTTCATGCAACTGCTTATGAAGCTATTCAGACTCTTTCCACATTGGTTTTGGAAGACTTTCCCCAAAGGGGGGCTCGTGTGTTGCATGAGTCAAATGCAATGAGACCCCTATTGGAAATCTTGAATTGGGGAACTGATTCTCTCAAGTCAGAAGCTCTAGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATACTATGGAATAACGGCAAGGTTACGTCTACTTGGTCTCACTTGCATGAATGTATATGGGGATGGCCACCTAAGGAGAAAGGCTGCCAGGGTACTGTCATTGCTTGAACGCTATTCAAAGTCATCGGCATCTTCAATCTCTGGAGTTCTGGAGTGA 3066 0.4126 MVGLELIPMGRILTVLTSQVVKTANAAIDVVDKESFKVLSKHLLDIAPVLKELQLQELNESEAARVALESLESDVKKANNLVEKYRNRGRFYLLVRCRYIGKEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQNEMQTVEFEASQYQLQIVDKLNHGIREQKLDQAFANDMLEEIARAIGVPVEPLEISKELASIRQEREEAASRKESPDFIFLEQIIELLSRADAARDYEQVKKQYFKRVQVIERYESRERYIRPLNSFLCPITEAVMVDPVSLCTGTTCERSAIEAWFDDGNRTDPETKEVLEDTTLRSNVRLRESIEEWREVNYCFGIRSIRESLLSNSDLLVQESLSQIQALIRENSINKDWITIGELTDIIISILGESDSRDVKMKILITLKDAVEGHARNKEKVVESQGWYHIISCLGSDSRISKEAIDLLYELLQDLSGWNKSFCKKLSEHPSAISYLITLLKGPESDPAGVSEKILMELFEIDEENISDAAKFGWYKPLIDQMIQGSESSRMSMAKTIVNLELKDLNLKHLGELGVMLPLLEMLSGSIESKELSLSALVKLARLHANKGIIAKCGGVPLVVDLMFSCRMRSFITIKCCEILEKLASDDDGIDFFVDGEGKQLELDNIITNLLALMQSLSSVHYRKPALHALLSICKFETGLVKKAVLAANGVSLILPLLDDSDSEIRETAINLLFLFSQQEPEGVVEYLFRPRRLEALVGFLENDDNDDVQMAAAGLLANLPKSERELTMKLIDLGGLDAIISILKNGTMEAKENALSALFRFTDPTNIESQHDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLAAVSKSSGCSCTPWWCFSFRSSKVPLCSAHGSVCNVNTTFCLLEANSLHGLIRLLHGEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNAMRPLLEILNWGTDSLKSEALGLLEKVFVSKEMVEYYGITARLRLLGLTCMNVYGDGHLRRKAARVLSLLERYSKSSASSISGVLE 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0150 1021 SUPERFAMILY RING/U-box 246 330 - -
Aed8g0150 1021 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1018 - -
Aed8g0150 1021 Coils Coil 126 153 - -
Aed8g0150 1021 SUPERFAMILY ARM repeat 562 968 IPR016024 -
Aed8g0150 1021 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Aed8g0150 1021 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 725 753 IPR000225 GO:0005515
Aed8g0150 1021 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Aed8g0150 1021 Gene3D - 865 1017 IPR011989 -
Aed8g0150 1021 CDD RING-Ubox_PUB 264 306 IPR045210 -
Aed8g0150 1021 SMART arm_5 407 446 IPR000225 GO:0005515
Aed8g0150 1021 SMART arm_5 671 711 IPR000225 GO:0005515
Aed8g0150 1021 SMART arm_5 713 755 IPR000225 GO:0005515
Aed8g0150 1021 SMART arm_5 757 797 IPR000225 GO:0005515
Aed8g0150 1021 SMART arm_5 800 840 IPR000225 GO:0005515
Aed8g0150 1021 SMART arm_5 924 964 IPR000225 GO:0005515
Aed8g0150 1021 SMART arm_5 536 575 IPR000225 GO:0005515
Aed8g0150 1021 SMART arm_5 576 618 IPR000225 GO:0005515
Aed8g0150 1021 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 332 IPR013083 -
Aed8g0150 1021 SUPERFAMILY ARM repeat 335 618 IPR016024 -
Aed8g0150 1021 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1018 - -
Aed8g0150 1021 Pfam U-box domain 263 328 IPR003613 GO:0004842|GO:0016567
Aed8g0150 1021 Gene3D - 486 854 IPR011989 -
Aed8g0150 1021 Gene3D - 333 480 IPR011989 -
Aed8g0150 1021 Coils Coil 61 88 - -
Aed8g0150 1021 Gene3D - 10 122 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0150 Aed-Chr8 1288034 1294201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0150 68 964 U-box Gene Family AT1G68940 23.761 8.87e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0150 - - gsj:114377374 1759.96