Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0112 ATGGCGAAAAAGGTAAAAGGGTCTCACTCTGCTTCTTCGGCCTCTGCTTCTGCATCTTCCGGCAAACTGGCATTGAGGGTTAAAACAAACGAGGGAATTAAGAGGTCAGTGCGGCAGACTAATTCAAGAAAGAAGCCCAATGCAAAGCAAAAGAAGAACAAACAAAAGTTTGATGCTATGAAACCAAAGAAACCTCCTACGGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAATAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACAAAAAAACGTGAAGAATTTGATAGTGCAATGGCAGAATTTAACAAGAAAATGGAAAATGGCGAGTTTGATGAAATTGATGAGGAATCAGAGTTTGATGAATGA 453 0.3907 MAKKVKGSHSASSASASASSGKLALRVKTNEGIKRSVRQTNSRKKPNAKQKKNKQKFDAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKIMTYEEKVQYYDIATKKREEFDSAMAEFNKKMENGEFDEIDEESEFDE 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0112 150 CDD HMGB-UBF_HMG-box 62 128 - -
Aed8g0112 150 MobiDBLite consensus disorder prediction 8 24 - -
Aed8g0112 150 MobiDBLite consensus disorder prediction 1 63 - -
Aed8g0112 150 Pfam HMG (high mobility group) box 62 131 IPR009071 -
Aed8g0112 150 Gene3D High mobility group box domain 56 145 IPR036910 -
Aed8g0112 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 62 131 IPR009071 -
Aed8g0112 150 SUPERFAMILY HMG-box 48 138 IPR036910 -
Aed8g0112 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 2 149 - -
Aed8g0112 150 SMART hmgende2 61 132 IPR009071 -
Aed8g0112 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 2 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0112 Aed-Chr8 946983 950123 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aed8g0112 HMG_box 1.7e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0112 - - gmx:100809401 223.016