Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0109 ATGAAAGAAAAAGTGCCGGTAGTTAAGCCTAAGCCTAAGTCCAAGCCCAAGCTCAAGCCCAAACCCAAGCCCAAACCCAAACCCAAGCTCAAGCCCAAGAGAAAACAAAAGCGAGAGATTAAGAAAATAGAGGATAAGAAAGATCTTCGCATTACTTTGGCTAAGAGAAAATGTTGCATTTACAAGAATGCTAGTGAGTTAACAACTGTTAGTGGTGCAAAGGTTGATATGCTTATGCGTACTTCATCTGGAAACTGGTTTAGTTACGGTGAACCTTCTCACAAGGCAATGGAAGTAGTGTCTGGTGATGGTAATGGCTATGGTGGTGACGAAGAGGATCACCCCAAATCTGAGATGGATGTACTCTGTGAAAAAAACAAGACACTTTTGGATCAATTGTACTTTGAGGAAGTACGTGGGAATGAACTTGGAATAATTCAGAGTAAAAGATCAAACACTACTACATGCGGTTGGTGGGAGACCGATGTAGAAGAACTTAGTTCTGAGGAAGCCAAGGAACTTGAGGCATCTTTTGTGACACTCAAACATAAATTGGAAAATCAGCTTCTTGACGAGAATGAGAAACCTTCTCCAAGTAATGAGAATAGTGGTGAAAATGATGATATGATCAGGGACTCAGGTTTACTTCTAAAAATTATGGTTACCAAATAA 672 0.4018 MKEKVPVVKPKPKSKPKLKPKPKPKPKPKLKPKRKQKREIKKIEDKKDLRITLAKRKCCIYKNASELTTVSGAKVDMLMRTSSGNWFSYGEPSHKAMEVVSGDGNGYGGDEEDHPKSEMDVLCEKNKTLLDQLYFEEVRGNELGIIQSKRSNTTTCGWWETDVEELSSEEAKELEASFVTLKHKLENQLLDENEKPSPSNENSGENDDMIRDSGLLLKIMVTK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0109 223 Gene3D - 45 106 IPR036879 GO:0003677|GO:0046983
Aed8g0109 223 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Aed8g0109 223 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Aed8g0109 223 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Aed8g0109 223 SUPERFAMILY SRF-like 35 97 IPR036879 GO:0003677|GO:0046983
Aed8g0109 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
Aed8g0109 223 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Aed8g0109 223 MobiDBLite consensus disorder prediction 11 37 - -
Aed8g0109 223 PANTHER AGAMOUS-LIKE 58-RELATED 32 195 - -
Aed8g0109 223 MobiDBLite consensus disorder prediction 1 44 - -
Aed8g0109 223 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Aed8g0109 223 PANTHER MADS BOX PROTEIN 32 195 - -
Aed8g0109 223 MobiDBLite consensus disorder prediction 187 212 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0109 33 185 Type I MADS-box Gene Family AT4G36590 29.268 7.80e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed8g0109 SRF-TF 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0109 - K12412 gmx:102665718 174.481