Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0094 ATGGCCGACGATCCAATGCCCACGCGCTGGTCCTTCCAGGACTTCAAATCGTGTTATGATGCTAAGTTTGGTAGGAAGAAAGTAGCCGAGAATGGTGAGATTGCTGATAAAGCGGTCGGTAATGGAAATTCAGTGACCATTGTGTCCAATGGATATTCACATCCCAAAAGGGCGTCGGAAATGGCTGTTTATGAGCAGTTTCAAAGTGAGGGGCAGAATCAGATTCACTCAAATGGCTTTGCGCCCACCATTGTAGATGAAAGGCCGTATGATTCTTTGATCCATCACTTTGTATTCTTGGACTTTGTTATTAGCATGCAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGAACTTTAGCAGAGAGCCTAAGTAGGGATATCATTCGTGGAAGTCCAGATGTGACGTGGGAAAGTATCAAGGGGTTAGAGAATGCCAAACGTTTACTGAAAGAGGCTGTTGTGATGCCAATTAAGTATCCCAAGTACTTCACTGGTCTATTATCACCATGGAAGGGCATCCTCCTTTTTGGTCCACCGGGGACAGGAAAGGTTTGTATTGGTGATTCAGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCAAGGCATCATGCACCCTCAACAATATTTCTCGACGAGATTGATGCAATCATTAGTCAACGTGGTGAAGCTCGCAGTGAACACGAAGCAAGTAGACGGTTGAAAACTGAGCTTCTCATTCAGATGGATGGTTTGACACGGACAGATGAACTGGTTTTTGTTTTAGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTACGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGTAGCGAGACTAGCAATGTTCAAGGAACTCCTTCCTCAGCAGCCTGATGAGGAATCGATCCCCTATGATATACTCGTGGAAAAGACAGAAGGATTTTCGGGGTCAGATATCCGGTTACTCTGTAAAGAGACAGCAATGCAGCCATTGAGACGCTTAATGTCACAACTCGAGAAGAGTCAGGATATTGTTCCTGAAGAAGAGTTGCCAATAGTTGGACCAATCAGATCTGAAGATATAGAGACAGCTTTAAGAAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAATTCAATGCTGATTATGGTAGTCAAATACTACAATGA 1188 0.4411 MADDPMPTRWSFQDFKSCYDAKFGRKKVAENGEIADKAVGNGNSVTIVSNGYSHPKRASEMAVYEQFQSEGQNQIHSNGFAPTIVDERPYDSLIHHFVFLDFVISMQKSLLPPFESAEMRTLAESLSRDIIRGSPDVTWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKVCIGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARLAMFKELLPQQPDEESIPYDILVEKTEGFSGSDIRLLCKETAMQPLRRLMSQLEKSQDIVPEEELPIVGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0094 395 Pfam AAA+ lid domain 310 342 IPR041569 -
Aed8g0094 395 SMART AAA_5 172 284 IPR003593 -
Aed8g0094 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 375 IPR027417 -
Aed8g0094 395 CDD AAA 143 282 - -
Aed8g0094 395 Gene3D - 189 385 IPR027417 -
Aed8g0094 395 Pfam ATPase family associated with various cellular activities (AAA) 189 281 IPR003959 GO:0005524|GO:0016887
Aed8g0094 395 PANTHER AAA DOMAIN-CONTAINING 190 393 - -
Aed8g0094 395 PANTHER AAA DOMAIN-CONTAINING 9 187 - -
Aed8g0094 395 Gene3D - 283 371 - -
Aed8g0094 395 Gene3D - 135 188 IPR027417 -
Aed8g0094 395 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 9 187 - -
Aed8g0094 395 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 190 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0094 Aed-Chr8 844725 850863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0094 170 356 Calmodulin-binding Proteins AT3G56690 33.953 1.19e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0094 K07767 - gmx:100794098 657.521