Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0068 ATGGCAACTCCTCCTCTCTCACCCTCTGAGTCTCCTCCAACACCCAGCTCCATTGATTGGATGGTTCTTGTGGCAGCAATTCTATGTGCCTTTGTTTGTGCTCTTGGCCTCAACACAATGCTACAATGTGTGTTTCAATGTGGTTCTCGTGTCCTCACTCAGCCTCGTCACTGGATTGCTTCACGCAGGCTCAACTCTGGCCTCAAGACTAAGGAAATGGTGGCTTTGCCAACCTCAACTTTTAATATTAATGACACTAACACACACTCTGCTTCTGCTGATTGTGTCATTTGCTTGGCTGAGTTCTCTGATGGAGACCCTATAAGGTTCCTTCCAAAGTGCAATCACTATTTCCATGTGGTTTGCATTGACAAGTGGCTCCTCTCTCACTCTTCTTGCCCTACTTGCAGGCACCTCCTCAAGTCTTCATCATCAAATCAAGATTCTCTTCACTCCTTACATATTGTCATAGCTTAG 477 0.4591 MATPPLSPSESPPTPSSIDWMVLVAAILCAFVCALGLNTMLQCVFQCGSRVLTQPRHWIASRRLNSGLKTKEMVALPTSTFNINDTNTHSASADCVICLAEFSDGDPIRFLPKCNHYFHVVCIDKWLLSHSSCPTCRHLLKSSSSNQDSLHSLHIVIA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0068 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 143 IPR013083 -
Aed8g0068 158 Pfam Ring finger domain 94 137 IPR001841 -
Aed8g0068 158 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Aed8g0068 158 PANTHER OS06G0666500 PROTEIN 14 149 - -
Aed8g0068 158 SUPERFAMILY RING/U-box 94 147 - -
Aed8g0068 158 SMART ring_2 95 136 IPR001841 -
Aed8g0068 158 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0068 Aed-Chr8 646510 646986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0068 2 140 C3H Transcription Factor Family AT2G17450 42.177 2.73e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0068 - K19040 gmx:100779286 233.417