Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0057 ATGGATCCATCAAATTTGGATGGGTCAAGTCGTGGGCATCGTCACAATGATGCTGCTGTCTCTAGACTGGAAGAAATCTTTCGGGAATGCCCATATCCAGATGAAAATCGACGCAGTCAAATAAGCGAGGAGCTAGGGCTTAATCCAAATCAAGTCAAATTTGGGTTTCAAAATAAGAAGACTCAACTAAAGGCTAAGAGTGAGCGAGTAGATAAGAATGCTCTTCAATACGAGAATGAAAGCATACAATCAGAAAACCTTGCACTGAGAGAGTCTTTACAGACTGAAACATTTTGCGTATCTTGTGGGGATCCACTTGTGGCCGTGGGATCAGTAGAGCAGCGTGAACTTCAATTGCAAGCCTTAAAGACTGAAAATCTTCAATTAGCTAATGAGGATTATGATGCACTTGATTACAACATCCCTCTTCCTGTGCTTGATCATCACTATATTTCTGCTCTTGCTAATGATCCTTGGCTTGGCCAAGATATACCTCCTTTCCCTACTCCTACTCCTACTCCCACTCCCACTCCCACTTTGGATCAAGATATTCCACATCTTGGTCAAGCTACTTCCACCCTTCCTGACCAAGAATTGGATGCGTTGTGTGGAATTTTGAACAATGATATGATATTCCAATCTATCATTGACCAAAGTACAAACCTGGACAATGCAATGATGTCACAGATTGCAAATAATTCAATCCAAGAGTTAATTAAACTTTTGGATAATTACCAAAACATACATGAGAGGAGACATTATTGCTTACCCGGACCTCATGTACGAATAGAAACCTCAAAAGATTCACGACTAGTGCACATGAATGGGGAACAACTTGTTGAAATGTTCATGAATTCGGACAAATGGGTTGATATGTTCCCAACAATTGTTACAAAAGCCAAGACAATTCAAGTACTCGAAAGCGGTTTGGTAGGAAACCGAAGTGGAACTTTGTTGTTGATGAATGCAGAAATGCACATTCTTTCGCATTTGGTTCCAACTCGGGAATTCTACTTCATTCGTTATTGTAGACAAATTGAAGAAGGTGTATGGGTGATAGGGGACGTGTCAATTGACTCCTCAGAATACAAAAACATTGTTCCTAGTGTTTGGAGGCATCCATCTGGATGTATGATTCGAGAAATAAATCAGGGATTGTGCAATGTTTCATGGGTGGAGCACGTAGAAGTAGATGACAAGATGCAAACTCACGAGCTTTTTAGAGATATTATTTGTGACAATAATGCATATGGAGCAAAAAGATGGCTTTTGACACTTGAAAGAATGTGTGAGAGATTTGTATGCGCCTCAGATAAAACTGTGCCTAGTCGTGATGAGTACTCTCGAGGAGTGATTTTATCTCTTGAAGGAAGGAATAATGTAATGCATGTAGCTCATCGAATGGTTAAGACTTTTTCTCGGACTTTAGACATGCGAGATAGTGCGAACTTCCCATATTTAACAAAGATGAATAATGGTGAGGTTACTGTAACTGTTCGCAAGAATAACTCAGAACCAGATATGCCACAAGGCCTAACTCTCAGTGCTGCTACCTCTTTTTTGCTTCCTTTCTCTCCACAAAATGTTTTTGACTATTTGATCGACAACAAGGAACGAGATAAGTGGGAGCCTCTTTGGTATGGAAAGCCAGGGCACGAGATTCAACGCATCTCAATTGGAAGTAATCCTGAAAATTTCATTTCAATTATGAAGCCTCTTGATACTGAGAACAATACGATGGTTCTTCAAGAAAGTTATATAGATACTTTGGGATCTATGATAGTATATTCTGCTTTTGATACAGAAGTAATGAATTTTGCTATGAGGGGAGAAGACACGTCACAGTTGCTGGTTCTTCCCTCTGGAATTACCGTATCTCGAGATGGCCAGTCAAATACTCTTGAAGGACAATCTGAATCAAGAGGTTCATTGGTGACTCTAATGTTACAACTTATGGCTTCCAGTACTCCTAGCATGGACACAGTAGACATGGAATTTGTAGGTTTTGTCACTACACTTGTGTCCTCGACAGTGGAGAGAATTAAAGCTTCTTTTAATTGTTCCAATTAG 2070 0.399 MDPSNLDGSSRGHRHNDAAVSRLEEIFRECPYPDENRRSQISEELGLNPNQVKFGFQNKKTQLKAKSERVDKNALQYENESIQSENLALRESLQTETFCVSCGDPLVAVGSVEQRELQLQALKTENLQLANEDYDALDYNIPLPVLDHHYISALANDPWLGQDIPPFPTPTPTPTPTPTLDQDIPHLGQATSTLPDQELDALCGILNNDMIFQSIIDQSTNLDNAMMSQIANNSIQELIKLLDNYQNIHERRHYCLPGPHVRIETSKDSRLVHMNGEQLVEMFMNSDKWVDMFPTIVTKAKTIQVLESGLVGNRSGTLLLMNAEMHILSHLVPTREFYFIRYCRQIEEGVWVIGDVSIDSSEYKNIVPSVWRHPSGCMIREINQGLCNVSWVEHVEVDDKMQTHELFRDIICDNNAYGAKRWLLTLERMCERFVCASDKTVPSRDEYSRGVILSLEGRNNVMHVAHRMVKTFSRTLDMRDSANFPYLTKMNNGEVTVTVRKNNSEPDMPQGLTLSAATSFLLPFSPQNVFDYLIDNKERDKWEPLWYGKPGHEIQRISIGSNPENFISIMKPLDTENNTMVLQESYIDTLGSMIVYSAFDTEVMNFAMRGEDTSQLLVLPSGITVSRDGQSNTLEGQSESRGSLVTLMLQLMASSTPSMDTVDMEFVGFVTTLVSSTVERIKASFNCSN 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0057 689 Pfam Homeodomain 15 64 IPR001356 GO:0003677
Aed8g0057 689 Gene3D - 228 409 IPR023393 -
Aed8g0057 689 Coils Coil 60 80 - -
Aed8g0057 689 CDD homeodomain 11 64 IPR001356 GO:0003677
Aed8g0057 689 Pfam START domain 260 432 IPR002913 GO:0008289
Aed8g0057 689 ProSiteProfiles START domain profile. 220 435 IPR002913 GO:0008289
Aed8g0057 689 Gene3D - 7 82 - -
Aed8g0057 689 SUPERFAMILY Homeodomain-like 8 71 IPR009057 -
Aed8g0057 689 Coils Coil 112 132 - -
Aed8g0057 689 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 11 687 - -
Aed8g0057 689 ProSiteProfiles 'Homeobox' domain profile. 20 66 IPR001356 GO:0003677
Aed8g0057 689 CDD START_ArGLABRA2_like 225 431 - -
Aed8g0057 689 SMART HOX_1 8 70 IPR001356 GO:0003677
Aed8g0057 689 SUPERFAMILY Bet v1-like 220 432 - -
Aed8g0057 689 SUPERFAMILY Bet v1-like 457 631 - -
Aed8g0057 689 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 11 687 IPR042160 -
Aed8g0057 689 SMART START_1 219 432 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0057 Aed-Chr8 584713 589161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0057 11 686 Homeobox Transcription Factor Family AT1G73360 37.255 1.39e-139 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed8g0057 START 1.2e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0057 K09338 - gmx:100783053 818.15