Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0056 ATGAGTACTTCAAAGGCAAATGAGTCAGGTCGTAGTCAACAAGATGCTAACAATTGGCGTCAGCGTCATGGTGCTGATACGGTGGCAAGACTTGAAGAATTATTCAAGGAAAGCTCACATCCAGGCGAAGCCCGACGTAACCAAATAGGTGAGGAGCTTGGGCTTGAGCCTGACCAAGTCAAATTTTGGTTTCAAAACAAGAAGACACAAATGAGGACTATAAGTGAGCGATTATATACCAATGCTCTTCGGAATGAGAATGAAATGATAAAATCAGAGAACCAGGCAATGAAAGAGGCTTTGGAGAATCTACCTTTAACTTGCGGATCTTGTGGAGGTCGATCCATGGAACTAGAAGAGCGTGGACTTTCTTTGCATCTCTTAAAGGCGGAAAATACTCTATTAACTCAAAGGTGCGAGAGAATAAAGGAATTTCTGGCAAGAAATGGGTTAAATCCAAAACCACTTCCCACCTTTCCTTCTTCTCCTTCTTCCCAAGATGTCCCACCAGGAAGTATGCTAAATGCTGGGAATCAACTCATTCTTAACCATGATAATCATATTCCTGCCCCAACTTCAACTCCTCTTACTACTCCTTCCACCAATCAAACTATTCCAACTCTTGATGATCCCTCTCTCAACCCAAGTAAAGATTTGGATAGTGTACTAATGTTGAAGATGGCAAACAATGCTGTGGAAGAATTAACGAAACTTATAAGTTTGAACGAGCCATTCTGGTTCAAGTCTTTATTAGACGGGAAATGGGTTCTTCAACGTGATCGTTACATAGAGAATTTCGGTTGGAGCAGTTGCTTGAACAACCCACATGCAAGAATGGAATCATCAAAAGATTCAAGAGTTGTCAAAATGGGTGGGGCACAACTTGTTGAAATGTTTTTAAATTCGGATAAATGGATCGATCTATTCCCAACCATTATAAAAAAAGCTCAAACACTTAAAGTGCTTGAAAGCGGTTTATTAGGAAACCAAAATGGAGCTGTGCAATTGATGAAGGCAAAAATGCACATTCTCTCGCATTTAGTTCCAACTCGAGAATTTCTCTTCCTTCGATATTGTAAACAACTTGAAGTAGGTGCATGGGTTATAGGGGATGTGTCAATCGATTCCTCAACAAACAAAACCCTGGTTTCTCGTGCTTGGAGGCTTCCATCTGGATGTCTCATTAAAGAATTGGCTGAGGGATTGTGTAAGGTTTCATGGGTGGAGCACGTGGAAGTTGATGATAAGATGCAAACCCACCCAGCCTTTAGAGAAGTTATTTGTGGAAACAACGCATTTGGAGCTGAAAGATGGGCAATGACACTTGAAAGAATGTGTGAGAGGTTTGCAAGTGCGTCAGCTAAAACAGTACCTAATTGTGAAGCTGAAGGAGTGATTAAATCATGCAACGAAAGAAGAAATATAATGCAACTTACCCATCGTATGGTTAAGTCTTTTTGTGGGAATTTGGAGATGCAATATAACCCAAACTTTCCATTCTTAACCAAGATGAATAACAGAGGGATTTGGCTATCTGTTCGAGTCAATAACACCGAACCAGATGCACCTAAAGGCATGATCATCAGAGCTGCTACCTGCTTTCATCTTTCTCTTTCTCCACCCACTGTTGTTGACTATTTGATAGACAACAAGAAAAGAGCCAAGTGGGATGTTCTATGCAATGGAAGTGCAGGGCACGAGATTCAACGCATCTCGACTGGAACTAATCCTGGAAATTGTATTTCAATCATGCGGCCTTTCATCCCTAAAGAGAACAACACAGTGATTCTTCAAGAAAGTTATGTAGATCATGCTTTGGGATCTATGTTGGTATATGCTCCTTTAGATATAGAGTTATTGAATTTGGCCATGAAGGGAGAGGACACCTCATTGTTCCCGATTCTTTCTTCTGGTATTAGCATATCTTGGGATGGCCAGACAACTGTTCCTCTTCCTCATGAAGGACAATATGGAGAATTTGGCAAATCAGGAGGTTCTTTGGTGACTCTGATGTTTCAAGTTTTGGCTTCTAGTCCATCTAAAATGGACACGGTGAACACTGATCAAATTGTAGGTCATATTAATCAACTTGTGGCCTCAACAGTGGAGAATATCAAAGCTGGTTTGAATTGTTCCAATTTGAAGTAA 2148 0.4069 MSTSKANESGRSQQDANNWRQRHGADTVARLEELFKESSHPGEARRNQIGEELGLEPDQVKFWFQNKKTQMRTISERLYTNALRNENEMIKSENQAMKEALENLPLTCGSCGGRSMELEERGLSLHLLKAENTLLTQRCERIKEFLARNGLNPKPLPTFPSSPSSQDVPPGSMLNAGNQLILNHDNHIPAPTSTPLTTPSTNQTIPTLDDPSLNPSKDLDSVLMLKMANNAVEELTKLISLNEPFWFKSLLDGKWVLQRDRYIENFGWSSCLNNPHARMESSKDSRVVKMGGAQLVEMFLNSDKWIDLFPTIIKKAQTLKVLESGLLGNQNGAVQLMKAKMHILSHLVPTREFLFLRYCKQLEVGAWVIGDVSIDSSTNKTLVSRAWRLPSGCLIKELAEGLCKVSWVEHVEVDDKMQTHPAFREVICGNNAFGAERWAMTLERMCERFASASAKTVPNCEAEGVIKSCNERRNIMQLTHRMVKSFCGNLEMQYNPNFPFLTKMNNRGIWLSVRVNNTEPDAPKGMIIRAATCFHLSLSPPTVVDYLIDNKKRAKWDVLCNGSAGHEIQRISTGTNPGNCISIMRPFIPKENNTVILQESYVDHALGSMLVYAPLDIELLNLAMKGEDTSLFPILSSGISISWDGQTTVPLPHEGQYGEFGKSGGSLVTLMFQVLASSPSKMDTVNTDQIVGHINQLVASTVENIKAGLNCSNLK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0056 715 Pfam Homeodomain 20 72 IPR001356 GO:0003677
Aed8g0056 715 MobiDBLite consensus disorder prediction 1 25 - -
Aed8g0056 715 MobiDBLite consensus disorder prediction 191 213 - -
Aed8g0056 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 711 IPR042160 -
Aed8g0056 715 SUPERFAMILY Bet v1-like 500 677 - -
Aed8g0056 715 SUPERFAMILY Bet v1-like 222 450 - -
Aed8g0056 715 Coils Coil 80 103 - -
Aed8g0056 715 Gene3D - 2 90 - -
Aed8g0056 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 13 711 - -
Aed8g0056 715 SMART HOX_1 16 78 IPR001356 GO:0003677
Aed8g0056 715 CDD START_ArGLABRA2_like 222 447 - -
Aed8g0056 715 MobiDBLite consensus disorder prediction 1 21 - -
Aed8g0056 715 ProSiteProfiles 'Homeobox' domain profile. 14 74 IPR001356 GO:0003677
Aed8g0056 715 CDD homeodomain 20 72 IPR001356 GO:0003677
Aed8g0056 715 ProSiteProfiles START domain profile. 217 451 IPR002913 GO:0008289
Aed8g0056 715 SMART START_1 226 448 IPR002913 GO:0008289
Aed8g0056 715 Pfam START domain 228 448 IPR002913 GO:0008289
Aed8g0056 715 Gene3D - 261 423 IPR023393 -
Aed8g0056 715 SUPERFAMILY Homeodomain-like 11 73 IPR009057 -
Aed8g0056 715 MobiDBLite consensus disorder prediction 191 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0056 Aed-Chr8 579348 583647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0056 21 711 Homeobox Transcription Factor Family AT1G17920 37.768 5.54e-148 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed8g0056 START 3.7e-37 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0056 K09338 - gmx:100783586 718.383