Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0044 ATGGTTACCCAACAGCCACAGCCACAGCCACAACCACAGCTTCAGGTTCAGCCTCCACAGCCCACACCCTCTTCACAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCACGTGTTAATCCCAGGGACTGTCGGTATTGGTTGAGTGGCAATTGCTTGAATCCCAAATGTTCATTTCGACATCCACCTCTTGATGGCTTGTTAGGATCACCAGCAGCGGCTGGCGGACCATCTGTACCCCCATCACAGATTCCAACAGTAACTGCAGCTGCAACTGCAACTGCAGCACATGCACCTTATAATTCCAGTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCATGGACCTCCCACTCCTAGCACTGGTAACAAAGTAGCTGCTCAGGTTCCAGTGACTAGCCAAGGAGCTGAGAATCCAAGTTTTAAGAAGCCATTTGTCAGCAATGAAAAATATACTCAGGAAAGGAAAACTTCCCTTGGGAATGTTTCAAAGTCTGGTGGAGGTCCTGAAGCTAAACCTGCTCCAAAAATTGAAACTGCACCTCAAAGAAATACGTTTGAATTGGAGAAGAAAGTGCCTCCACCATCCGTGGGATTTGATAATGATGCTGCTAGATTTAAGTCAAGTTCTCCACCAGTGACCAATGGCCCTACATCTGTAGCCCGGTCAAACCGTCTGCATCAAGCTCGTGTGCCAGATGATCACAATTTCCACAGTGGCAAGGACAGTGATGAGTTTCTCAGAGAGTCATCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTTAGGAATTCTGATTACTACCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGGAACTTAGACTCTTTGAATGAATATGATTTAGGACATTCTGGTGATTATAGTTTAGCAGCTGATATTGACAGAGAAAGATTTCGTGTGCCCCAAGGCTATGAGTCATATGATAACATGCAGGAGTTGTATGCTTGGGAGCAGCACAGAAAGCCCTCAGCCCATTTAGACAGAAGGACTCGCCGCAGATCTGTCAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCATTTATCCAAGCGCAGGAAGGGTAATGGTTTGAAATCTGTTGTCAGTCATAGTTATGCCCCTGAAGGCCATGGTGAGGAACAAAGTCGCCGGTCCTTCTCTCGGAAGGATTCACTCGAGTCACCTCTGAATGAGAGCTCCCTCGGTAATCGCTTCCGAGGTAGACTAAAACTTCCAGCAAATGGTGGTGGTGATCACCTAGAGAGGGAAGATAGGGGAGGAGGATTTAGGAGCAGATTGTCATCTGGAAGGTTGCATGACACCACTCACCAGGGAAGGATCCATGACAGAATAAGAGGAAGGTTGCCAGATGATGAGAGGAGAAACTCCAGGGATCGTTTGATGGGAGGGAGAGAACTATTGGGTGATAGGAGTGGATTTGCTGGGCCAAAAAGTCTTTCTGAACTTAAACATGGGAGGAACACTGAGAATAGGGAGCAACAATCACTGGGACAGAGAAGAAGTTTAAGGGATGATCGCCCACAATCTGACTATGATTTTCAGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAGAGGATCTGGAGCTGGAGCTGGAGCTGATGCAGACTCTGGGAATGGCAAATCATCCGACAATGGCTCAGATCCCATGCCTGTTGCAAACACACAAAACGGAGTGCTGTCTGAGACCAAAGAAGATGTCAAGAGTAATGAGAAAGAATCCAAGCTTGAGGTCACCGATGCAGCTGGAGGTGACAATGATGATCAATATGAGGAGGGACTGGTGTACGATGAAGCAGGTGAGGAACAGTATTATGAAGGTGATGATCAGAAAGATGCGGACTATGAGTATGAACAAGGTGAAGAGGGATACTATGAGTATGAACAAGGTGAAGAGGGTGAAAATCAAGAGGAAGATTACATGGAAGAAGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTCGTCCATACGTAA 2136 0.4616 MVTQQPQPQPQPQLQVQPPQPTPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGSPAAAGGPSVPPSQIPTVTAAATATAAHAPYNSSKQAVPCFFFQKGLCLKGDRCAFLHGPPTPSTGNKVAAQVPVTSQGAENPSFKKPFVSNEKYTQERKTSLGNVSKSGGGPEAKPAPKIETAPQRNTFELEKKVPPPSVGFDNDAARFKSSSPPVTNGPTSVARSNRLHQARVPDDHNFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERNLDSLNEYDLGHSGDYSLAADIDRERFRVPQGYESYDNMQELYAWEQHRKPSAHLDRRTRRRSVSPENAEVSDLRHHLSKRRKGNGLKSVVSHSYAPEGHGEEQSRRSFSRKDSLESPLNESSLGNRFRGRLKLPANGGGDHLEREDRGGGFRSRLSSGRLHDTTHQGRIHDRIRGRLPDDERRNSRDRLMGGRELLGDRSGFAGPKSLSELKHGRNTENREQQSLGQRRSLRDDRPQSDYDFQFEGPKPLSEILKEKRGSGAGAGADADSGNGKSSDNGSDPMPVANTQNGVLSETKEDVKSNEKESKLEVTDAAGGDNDDQYEEGLVYDEAGEEQYYEGDDQKDADYEYEQGEEGYYEYEQGEEGENQEEDYMEEEDGDDFAKKIGVVHT 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0044 711 Pfam RNA-binding, Nab2-type zinc finger 131 151 - -
Aed8g0044 711 MobiDBLite consensus disorder prediction 457 514 - -
Aed8g0044 711 MobiDBLite consensus disorder prediction 186 200 - -
Aed8g0044 711 MobiDBLite consensus disorder prediction 369 645 - -
Aed8g0044 711 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 19 710 - -
Aed8g0044 711 MobiDBLite consensus disorder prediction 545 561 - -
Aed8g0044 711 MobiDBLite consensus disorder prediction 1 28 - -
Aed8g0044 711 MobiDBLite consensus disorder prediction 680 711 - -
Aed8g0044 711 Pfam Zinc-finger containing family 31 85 IPR041686 -
Aed8g0044 711 MobiDBLite consensus disorder prediction 186 214 - -
Aed8g0044 711 MobiDBLite consensus disorder prediction 591 616 - -
Aed8g0044 711 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 19 710 - -
Aed8g0044 711 SMART c3hfinal6 31 58 IPR000571 GO:0046872
Aed8g0044 711 SMART c3hfinal6 126 152 IPR000571 GO:0046872
Aed8g0044 711 SMART c3hfinal6 63 86 IPR000571 GO:0046872
Aed8g0044 711 MobiDBLite consensus disorder prediction 418 433 - -
Aed8g0044 711 ProSiteProfiles Zinc finger C3H1-type profile. 61 87 IPR000571 GO:0046872
Aed8g0044 711 MobiDBLite consensus disorder prediction 680 698 - -
Aed8g0044 711 MobiDBLite consensus disorder prediction 617 635 - -
Aed8g0044 711 ProSiteProfiles Zinc finger C3H1-type profile. 126 153 IPR000571 GO:0046872
Aed8g0044 711 SUPERFAMILY CCCH zinc finger 127 151 IPR036855 GO:0046872
Aed8g0044 711 MobiDBLite consensus disorder prediction 369 396 - -
Aed8g0044 711 Gene3D - 22 87 - -
Aed8g0044 711 Gene3D - 117 193 - -
Aed8g0044 711 ProSiteProfiles Zinc finger C3H1-type profile. 30 59 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0044 Aed-Chr8 505174 509580 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed8g0044 zf-CCCH_3 4.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0044 - - gmx:100787836 1100.12