Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0032 ATGGACAACGCAGCTGCTGAACTTCAAACTGAGGCAGCAGCAGATCCTGCTCTTCTTCTACTTCACCACCGTAATAAGACTTGGGCTGGAAATGGGATTGGTGACAGTACCTCCTTGATGATTCCAGAGTCTTCCAGAAGACCAAGCCTTTCCTCTCTGCAGATACCAGCAAGGTCAGTGGAAAATGCATTATCTTCTTTTAACAAGACAGATTGTGCTACATTGATATCAAGTCCAGGTTCCACTAGAGGACTTCTTCCCCCAAGGCCAAATTCAGCCAGAGCCATCAAGTCCACTATGAAAACTTTACTCTCTGAGAGGAGCTTTAGGGCTAAGAATTCTTCACAGGATAGTGAAAGGACAGTTCTTATTGTTCCTGATACCTCACCATCAGATGCTCCTCCTGTGGATAATAAGCCTTCAACTTCCAGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCCTCAACCAAAGCAGCACATTCATTGCCAGTTACTCCAACAGGTGCAGAGAATCTACATGGAAGACATCTAGGGTGTGATTCTGATTCAAGTAAAATGAAAGTAAATCAGCTCATGACTCGATCAGTTTCGGTTCCAGTTAATATCAAAACAGCTAATTTAAGGCATACAGATTCTAGAAGGCTGGTTCGTGTAATTTCAGTTAGATCACTTCCAGGCACTAGTGATGGCATTTCAGCTAACAATGCTTTGGGATCAGAGATCGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGGAATAGTCTTAGAATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAATGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGATGTATCAGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAGCTACTGGTTTCAGATTTGGGCACTCGTGCTCTTGCCATTTCATTACCTTTCTCCTGTGTCTTAGGTCTCCTTTCATCTATGATTGCTTCAACCATGGTGAGCGGGAGTTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACTGTAATGGAGAACAAGACTGATTCAATCTTCTACGACACAGCAGCATCGCCGTGA 1182 0.4332 MDNAAAELQTEAAADPALLLLHHRNKTWAGNGIGDSTSLMIPESSRRPSLSSLQIPARSVENALSSFNKTDCATLISSPGSTRGLLPPRPNSARAIKSTMKTLLSERSFRAKNSSQDSERTVLIVPDTSPSDAPPVDNKPSTSRSLSLNKILFSSSTKAAHSLPVTPTGAENLHGRHLGCDSDSSKMKVNQLMTRSVSVPVNIKTANLRHTDSRRLVRVISVRSLPGTSDGISANNALGSEIVCRICLVELAEGGNSLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVQNLPDVSVLVLVSMLAYFCFLEELLVSDLGTRALAISLPFSCVLGLLSSMIASTMVSGSYMWAYACFQFAIVILFAHVFYTVMENKTDSIFYDTAASP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0032 393 CDD RING_CH-C4HC3_MARCH 244 292 - -
Aed8g0032 393 MobiDBLite consensus disorder prediction 107 125 - -
Aed8g0032 393 Pfam RING-variant domain 244 291 IPR011016 GO:0008270
Aed8g0032 393 ProSiteProfiles Zinc finger RING-CH-type profile. 236 298 IPR011016 GO:0008270
Aed8g0032 393 PANTHER OS02G0165000 PROTEIN 20 299 - -
Aed8g0032 393 SUPERFAMILY RING/U-box 241 295 - -
Aed8g0032 393 PANTHER OS02G0165000 PROTEIN 300 379 - -
Aed8g0032 393 SMART ringv_2 243 292 IPR011016 GO:0008270
Aed8g0032 393 PANTHER OS02G0165000 PROTEIN 20 299 - -
Aed8g0032 393 PANTHER OS02G0165000 PROTEIN 300 379 - -
Aed8g0032 393 MobiDBLite consensus disorder prediction 107 144 - -
Aed8g0032 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 301 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0032 Aed-Chr8 409743 416144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0032 241 309 C3H Transcription Factor Family AT2G37950 41.429 1.97e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0032 - - gmx:100779396 600.897