Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0017 ATGAATATGAGTAGTCTTCCAGAAAATGCAACAAGTAGCGCTCCTCCTCCACATCTGTATCCACAGGAACTTCAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATCCCCATACTCTTTTCCATCATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGAAGAGCTTCCTCTCTCTCTCTCTCCCACTCCTCTTCCTCTCCCCACTTTCTTCATGCAAGAACCACACCATCCTTTCATTCCTCTCCTTGTCGTTTGGATCTGACCCTCCAATTCCTGGATAAACTTCCAAGAATTTTATTTGATGAGGATTTGCTAGCAAGGGATTCACTATGTTGTGTTTGTCTTGGGGAATTTGAGGTGAAAATAGAAGAGGTGATAGAGATACCAAATTGCAAGCACGTGTTCCACTTGGAATGCATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACCACTACAAAGTTCCTCCTCATCAACCCAGCAGCACCACCACCGCCAATTAATATTAATATTAATATTATATCAGAAGAATCAGACCCACCCTCCCAGCACCATGTCCATGGTGCTATCATTTCGGACTCTCCATTACAACAAACATCATTGCCACATCAAGAACATGTTGCTGCTTCCTCAAATGCTGCCTGCTAA 681 0.4288 MNMSSLPENATSSAPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSLSHSSSSPHFLHARTTPSFHSSPCRLDLTLQFLDKLPRILFDEDLLARDSLCCVCLGEFEVKIEEVIEIPNCKHVFHLECIHHWLQSNSTCPLCRCSIIPTTTKFLLINPAAPPPPINININIISEESDPPSQHHVHGAIISDSPLQQTSLPHQEHVAASSNAAC 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0017 226 ProSiteProfiles Zinc finger RING-type profile. 113 156 IPR001841 -
Aed8g0017 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 161 IPR013083 -
Aed8g0017 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 12 168 - -
Aed8g0017 226 Pfam Ring finger domain 113 156 IPR001841 -
Aed8g0017 226 SMART ring_2 113 155 IPR001841 -
Aed8g0017 226 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 12 168 - -
Aed8g0017 226 SUPERFAMILY RING/U-box 91 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0017 Aed-Chr8 249890 252277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0017 25 161 C3H Transcription Factor Family AT4G10150 39.855 3.11e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0017 K19039 - gmx:100813129 253.832