Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0004 ATGAAAGGGCAGGGTAGAGAATTGATTGATTCGGCTTCCTCATCGGTGGTCTCAAGTGCGCTTCAGCAGCGCCTCCAATTCATTCTGCATAGCCGTCCAGAGTGGTGGGTCTATGCCATCTTCTGGAAAGCTACGAAAGACAGTGATTCCCGTCTCACATTGGAATACAGCGATGGCTACTTTCGCGGGGCAAAGGGCAAAGAGGAGCAAACGAGGAATGTTGTGAACGACATGGAATGGTTCTACAGGGTGTCGCCAACTCGCTCGTATGTTGCCGGTGACGGTGTCATTGGGTGTGCCTTCAGCTCAGGGGTAGATGTTTGGTTGAGCGGAGTAAACGAGTTTGAACTGAACGAGTGTGACGACAGAGTAAGGGAAGCTCGTGGTCACGGGATCCACACTTTGGTCTGCGTTTCTATACCACGAGGCATCCTTGAGCTGGGTTCGTGTCATGTCTTCACTCTCGATTACGGCCTTCTCCAAATGGCCAAATCAGTGTTTGAACTGGAGGAACGTCAGAATCAGAATTCACTTTACACAGAGAAACAGAAACAGAGAAGAGGGCTGCAGTTAAATGATGCATCCACCGACTCATCTGATGCGGATGTTCCGAGAAGGGCTGTGACTGGTATGGCACGTGAGGCGCTGCCTATTAATCACGTGGAGGCTGAGAGGCAGCGGCGAGAGAAGCTGAATCAGAGATTCTACGCTCTTCGCTCTGCTGTCCCCAACGTATCCAAGATGGACAAAGCGTCTCTGCTTTCGGACGCCGTTGACTACATCAATCAACTCAAGGCCAAAATCAACCACCTGGAGGTTGTTGCATTAGAGAGCAATCTCAAAAAAGTGGAAGCATCTGCTGTTGCTGCAGAGCATGTCTCTGCAACTACTACTACCAATATGAGAGTTGAAGTGAAGATCTTGGGATCCGAAGCCATGATAAGGGTCCAGAGCCTAAACGTGAACCACCCCTCTGCGAGGTTAATGGATGCTCTCAGGGACCTCAATTTGCAAATTCTTCATGCCACAATGTCCAACATCAAAGAGATGATGCTGCAAGATGTCGTCGTCAGGGTTCCCCATGACCTCATGACCCAAGACGCGCTCCAAAATGCCATTCTTCACAGACTCTGA 1134 0.5 MKGQGRELIDSASSSVVSSALQQRLQFILHSRPEWWVYAIFWKATKDSDSRLTLEYSDGYFRGAKGKEEQTRNVVNDMEWFYRVSPTRSYVAGDGVIGCAFSSGVDVWLSGVNEFELNECDDRVREARGHGIHTLVCVSIPRGILELGSCHVFTLDYGLLQMAKSVFELEERQNQNSLYTEKQKQRRGLQLNDASTDSSDADVPRRAVTGMAREALPINHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVDYINQLKAKINHLEVVALESNLKKVEASAVAAEHVSATTTTNMRVEVKILGSEAMIRVQSLNVNHPSARLMDALRDLNLQILHATMSNIKEMMLQDVVVRVPHDLMTQDALQNAILHRL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0004 377 Pfam Helix-loop-helix DNA-binding domain 219 265 IPR011598 GO:0046983
Aed8g0004 377 Gene3D - 212 280 IPR036638 GO:0046983
Aed8g0004 377 MobiDBLite consensus disorder prediction 178 198 - -
Aed8g0004 377 MobiDBLite consensus disorder prediction 178 203 - -
Aed8g0004 377 SMART finulus 221 270 IPR011598 GO:0046983
Aed8g0004 377 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 17 377 - -
Aed8g0004 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 264 IPR011598 GO:0046983
Aed8g0004 377 PANTHER MYC 17 377 IPR045084 GO:0003700|GO:0006355
Aed8g0004 377 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 21 167 IPR025610 -
Aed8g0004 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 274 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0004 Aed-Chr8 72369 73502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0004 13 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.793 6.34e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed8g0004 bHLH-MYC_N 6.7e-30 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0004 - K13422 gmx:100777730 538.88