Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2540 ATGGAAAGAGAGTTTGAGTTTGATGAGTATGAGTATGAGTATGAGAGAGGATACATAAAGAAGGGGCCATGGAGTAGTGAGGAAGATGAAGTGCTGTTGAGACACGTCAGCAAATATGGTCCTAGGGAATGGAGCTCCATTCGATCCAAAGGCTTCTTGCCCAGAACCGGAAAATCTTGTCGCCTTAGATGGGTTAATAAACTCAGACCCAACTTAAAGACTGGATGCAAGTTTACAGCGGAAGAAGAAAGGTTGGTGATAGAATTACAAGCACAATTTGGGAACAAATGGGCTAAAATTGCAACGTATTTGCAAGGGAGAACGGACAATGATGTGAAAAACTTTTGGAGCAGTAGGAGAAAGAGGCTGGAGAGGATGTTGCAGAAGCCACCAACTTCGTCAAAGCCGCAGAAAAACAAAGAAAAAACTCCTCTTAATCAAGTGCAAGTGGACAATAAGGTTCCTCCATGCAGTTCCAATAATCAGGTGGAGGAAATTCTTTCATACCCTACTTCCTATATGGAAAACACCCAAGTGTTCGAGATGATCAACCACCTTCCAGATTTGATAAGGCCAGACTATCAACAGTTGAAGAATGATAATTACCTCCTCAGTGCAGTTGAGGCTGAGGCCACCCCATTTCACACATTACCATCGTTTGAGTCTTCATCAGGGTACAACTTCCCTCTACTCCTCCCTAAACTTGAACCACTATTATTTGACTTTCCACTATTCCCAAAGTTCCAGGACCTTGTTCCTGAGCCCCTTGGTCCAAATTTCGTTGACGAGTTACAGGAGAAAAAATGTTCGGATGAATGTGTATGCAGCAGCAGCCAAAAGCTTGGACTCGAAGGAAATTCTCAAAGTACAAGTTCAAATGGCTTTTTCAAGGACTTTCCGAGCGACATTTTTGAATACTTTTGA 924 0.4264 MEREFEFDEYEYEYERGYIKKGPWSSEEDEVLLRHVSKYGPREWSSIRSKGFLPRTGKSCRLRWVNKLRPNLKTGCKFTAEEERLVIELQAQFGNKWAKIATYLQGRTDNDVKNFWSSRRKRLERMLQKPPTSSKPQKNKEKTPLNQVQVDNKVPPCSSNNQVEEILSYPTSYMENTQVFEMINHLPDLIRPDYQQLKNDNYLLSAVEAEATPFHTLPSFESSSGYNFPLLLPKLEPLLFDFPLFPKFQDLVPEPLGPNFVDELQEKKCSDECVCSSSQKLGLEGNSQSTSSNGFFKDFPSDIFEYF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2540 307 Gene3D - 76 151 - -
Aed7g2540 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 64 IPR017930 -
Aed7g2540 307 Pfam Myb-like DNA-binding domain 77 117 IPR001005 -
Aed7g2540 307 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Aed7g2540 307 CDD SANT 77 116 IPR001005 -
Aed7g2540 307 CDD SANT 23 68 IPR001005 -
Aed7g2540 307 Gene3D - 20 73 - -
Aed7g2540 307 SMART sant 20 70 IPR001005 -
Aed7g2540 307 SMART sant 74 122 IPR001005 -
Aed7g2540 307 PANTHER TRANSCRIPTION FACTOR DUO1 13 307 - -
Aed7g2540 307 Pfam Myb-like DNA-binding domain 24 74 - -
Aed7g2540 307 ProSiteProfiles Myb-like domain profile. 77 120 IPR001005 -
Aed7g2540 307 MobiDBLite consensus disorder prediction 124 154 - -
Aed7g2540 307 PANTHER MYB TRANSCRIPTION FACTOR 13 307 - -
Aed7g2540 307 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Aed7g2540 307 MobiDBLite consensus disorder prediction 130 154 - -
Aed7g2540 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 124 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2540 Aed-Chr7 27043507 27045091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2540 11 189 MYB Transcription Factor Family AT3G60460 56.383 5.38e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed7g2540 Myb_DNA-bind_6 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2540 K09422 - gmx:100793689 445.277