Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2533 ATGGTGCTTTGGAATCATACAAATAAACCGCAACGCGTTTCATCATCGATTCACCCAAATTCAACGAAACACCATCCCCACCTCAATGGTGTATGTATAATGGAGCTTGATTTGAATCAGGAGCCTTCGGATCCAACTCATGCTTCTCCAGATGAATTTGATTCTTTGTTGGAAGAACTAGAATCTGCCCATGAACACGTGCAGGACCGTATTAGGCGCCTTGAAGCGATAACATCGAGAACCAGGCAGTATCAGAGGTGGCCACTGTTTCACACTCCAATCCAAATAACCAACTTTACAGGACAAACCAGCACACCAGCTGATGCTCGCGAAGAAGGAATGCAGAGCCGGGAAGTTGAGGAAAGATTCGTTGAAAGTGGGAGAGGGTGCAAAAGGAAAGGTGCCCATTTAATAGCTAAGCCATTGGGGAGGATTGAAACAGATGCTAGTAAGGAAGGGGGAAGCACTGGAAATTTCTATGACTGCAATATATGCCTTGACAGGGCAAGAGATCCTGTGTTGACCTGCTGTGGTCACTTGTTTTGTTGGTCATGCTTCTATCAGGTAGAAATTGTCTCTTCAAATGTGAGGGAGTGCTCCGTTTGTAAAGGAGAGGTTACCGAAACTGGCATTATTCCGATTTATGGCAACTCTAGTGCTGATGCCAGTTGTGAGTCAGGATTAAAAGGAGCTGGTTTGAGAATTCCTCCTCGACCCGCTGCACCCAGAATTGAGAGTTTTAGGCAGCAGCTAATAAGCCAGGGAGCATCTTCTTCTGTAATCCAAAATATCCGGCGCTTTCATCACCTTATTGGCGGGTTTGGATCGCGAGGTCAGTCACAAAGCCCCAATGCTGTAACTGATAGAAATAATGGTTTGCTCATTCAGTCTCGCCTGCAGACAGGCAATGATCGCAGTACTGGTTCCTCTCCGACTCCGATTTCAACCTTGTTAGTGCAAGGAGCTGCTTCTTTTTCATCCCTTTCATCAGCATTAAATTCTGCGATGGATTCTGCTGAGAGATTAGTTGAGGACCTTGAGTCATATATTCACAATTCAAGCCATAATGGGAATGTTGCTGCAACTGATTCCACACCTGCAGTTTCTACATCTCCTTTTAGTAGGAATGTTGATACCACTGCTGATGTTGGCTCAGAAATTCAGACAACAGATAGTAACATACAGACTGAGACTAGTCCATTGGACCCTTCTTCATCTCAAAGAGGAAGCACTCGTGTTTCAACTTCAAGACAAGTTTCAAATGATCGCAGAAGGAGGAGGTCAAGATGA 1290 0.4496 MVLWNHTNKPQRVSSSIHPNSTKHHPHLNGVCIMELDLNQEPSDPTHASPDEFDSLLEELESAHEHVQDRIRRLEAITSRTRQYQRWPLFHTPIQITNFTGQTSTPADAREEGMQSREVEERFVESGRGCKRKGAHLIAKPLGRIETDASKEGGSTGNFYDCNICLDRARDPVLTCCGHLFCWSCFYQVEIVSSNVRECSVCKGEVTETGIIPIYGNSSADASCESGLKGAGLRIPPRPAAPRIESFRQQLISQGASSSVIQNIRRFHHLIGGFGSRGQSQSPNAVTDRNNGLLIQSRLQTGNDRSTGSSPTPISTLLVQGAASFSSLSSALNSAMDSAERLVEDLESYIHNSSHNGNVAATDSTPAVSTSPFSRNVDTTADVGSEIQTTDSNIQTETSPLDPSSSQRGSTRVSTSRQVSNDRRRRRSR 429
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2533 429 Coils Coil 57 77 - -
Aed7g2533 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 38 407 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aed7g2533 429 Pfam zinc-RING finger domain 162 203 IPR001841 -
Aed7g2533 429 CDD RING-HC_AtRMA_like 160 204 - -
Aed7g2533 429 MobiDBLite consensus disorder prediction 354 429 - -
Aed7g2533 429 MobiDBLite consensus disorder prediction 1 23 - -
Aed7g2533 429 MobiDBLite consensus disorder prediction 354 417 - -
Aed7g2533 429 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Aed7g2533 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 216 IPR013083 -
Aed7g2533 429 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 38 407 - -
Aed7g2533 429 MobiDBLite consensus disorder prediction 1 26 - -
Aed7g2533 429 SMART ring_2 162 202 IPR001841 -
Aed7g2533 429 SUPERFAMILY RING/U-box 158 211 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed7g2533 Aed-Chr7 26988671 26990731 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2533 113 301 C3H Transcription Factor Family AT3G58030 38.776 3.31e-33 127
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2533 K10666 - gmx:100794016 623.624