Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2532 ATGACGACTCGAATTGCGCCCGGTGTGGGAGCCAATTTGCTCGGTCAACACGCCGCTGAGAGGAACCAAGACGCCACTGCTTATGTCGGCAATCTCGACCCTCAGATAAGTGAGGAGTTATTATGGGAATTGTTTGTTCAGGCTGGTCCAGTCGTAAATGTCTATGTTCCCAAGGATAGAGTCACCAACCAACATCAGGGTTATGGATTTGTTGAATTCCGCAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTCAATAAGGCATCCCAAGATAAAAAAAGCTTGGATGTTGGGGCAAACCTTTTCATTGGCAATCTTGATCCTGATGTTGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCGAAGATAATGAGAGATCCTGAGACAGGAAACTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGGCAATGAATGGACAGTATCTTTGCAACCGTCAAATTACAGTGTCATATGCTTACAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCTGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCATACTTTATTTGCCAGTGGACCACCAACACTTCCCAGTGTTCCTCAGGCTAATGGGGTTGCTCCAGTGCCTCCCCGACCCTTTGCTAATGGGGTTGCTCCTCCTCCAATGCCTGCCCTCCGTCCACCACCCCCTCAAGCTGCTGCATTCCAGCCTATGCCAGTGCCTGGACAACCAACATGGCATCAGCAACAACCAGGTCAACCAATGTTATCACCTGCAATGCCACCTCCACCTCAAATGCAGCAGTTCAGGCCACCTCACCCTGGTATGCAGCAGATGCCACCACCTCCACAAGCTCCTCCCAGACCTCTTCCGCCACCATCAGTAATGGCAAGTCAGCCACCTCCTGTTTGGCGACCACCACCACCTCAGCAACAGGGTGGACGGCCTATGCCATACCCTCAGTCCGCAATGCTGCCACCGCCACCTCCCCAGTAA 1098 0.4973 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFASGPPTLPSVPQANGVAPVPPRPFANGVAPPPMPALRPPPPQAAAFQPMPVPGQPTWHQQQPGQPMLSPAMPPPPQMQQFRPPHPGMQQMPPPPQAPPRPLPPPSVMASQPPPVWRPPPPQQQGGRPMPYPQSAMLPPPPPQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2532 365 CDD RRM2_SF3B4 111 193 IPR034159 -
Aed7g2532 365 CDD RRM1_SF3B4 28 100 IPR034158 -
Aed7g2532 365 Gene3D - 16 106 IPR012677 -
Aed7g2532 365 PANTHER TRANSFORMER-2-RELATED 1 354 - -
Aed7g2532 365 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Aed7g2532 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Aed7g2532 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Aed7g2532 365 MobiDBLite consensus disorder prediction 289 365 - -
Aed7g2532 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Aed7g2532 365 MobiDBLite consensus disorder prediction 193 365 - -
Aed7g2532 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Aed7g2532 365 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 354 - -
Aed7g2532 365 SMART rrm1_1 26 99 IPR000504 GO:0003723
Aed7g2532 365 SMART rrm1_1 113 187 IPR000504 GO:0003723
Aed7g2532 365 MobiDBLite consensus disorder prediction 237 271 - -
Aed7g2532 365 Gene3D - 107 205 IPR012677 -
Aed7g2532 365 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2532 Aed-Chr7 26983083 26988157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2532 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 2.13e-06 47.8