LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g2531	ATGGCTTCAATGCAAATCCTGTGTGCATGCACTGCCACTACTCAGCTTCAACTCCATAACCGTGACAGGATCTCTAGTAAGAAAAGGTGTTATTCAGTTAGAGTGGTTGAAAGTGGGAATGGGATAATGGTTCTTTCAAATCTAGAGGAAGAGAAGAAGAAGAGGAAGCTGAGAGTGTTGGTGGCTGGTGGGGGCATTGGTGGTCTTGTTCTGGCTCTGGCTGCAAAGCATAGAGGGTATGAAGTGGAGGTGTTTGAGAAGGATTTAAGTGCTGTTAGAGGAGAAGGTAGTCACCGTGGCCCTATTCAACTCTTGAGCAGTGCACTTGCTGTGTTGGAAACCATTGATCAGAGTGTTGCATGCCGGATTATGGAGGCTGGCTGTGTCACTGGCAATAGGACTAATGGCCTTGCTGATGGTCTTTCTGGGGAGTGGTTCAGTATATTTGATCTTTTTACTCCTGCTTCAAGGAAAAGGCTTCCTCTTACCCTAGTCATATGTAGAATGGCACTGCAAGATATATTAGTGAACGCAGTTGGTTCCAACATAATTAGAAACAAATCTAAAGTTGTGGATTTTATTCAGGAACCTAGCAAGGTTAGAGTGATCCTTGAAAATGGAGAGCAACATGATGGTGATATTTTAATAGGAGCAGATGGAATATGGTCAGAATACTTTGTTGCTTCAGATGTCGGCCATGGGAAGATGCAATGGTATGCTTTCCATGGGGAACCCCCTTCAAGTGATCCTTTACCAGGAGTTATAGAAGGTAAGAAGAAGAGGCTTTTGGATCACTTTGGCAATTGGTGCAATGATGTGATTGAACTCATATCAGAAACACCAGAGCATATGATTCTGCAGAGGGATATATATGACAGAGACATGATCAACACTTGGGGAATTGGGAGAGTGACTTTGTTAGGTGATGCAGCACATCCAATGCAACCTAATCTTGGTCAAGGGGGGTGTATGGCAATAGAGGATTGTTACCAACTGATACTTGAGCTTGACAAGGTTCCTAAACATGGCTCTGACGGGTCTGAAGTTATCTCGGCCCTTAGAAGTTATGAGAAGAAAAGAATCCTACGAGTTAGGAATGTAAAAAATATGCAGATAAAGCACCCTGGCCTTCATGTAGCACGAGCCCTTTTCAAGTTCACTTTTCCACAATTTGTTACTTGGATGATTGCAGGCCATGGTTTGTTAGCCAAACCCTCCTTCAACATTTTCTCTCGTTGCAGCGCAGCAGTTGAATTTGAAAAAAAGATGTCTCACCGGAAGTTCGAGCACCCGAGACACGGGTCCCTCGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGTGGAAAGGTGAAGTCTTTTCCAAGAGACAATCCTAGTCAACTGTGCAGGTTGACTGCCTTTGTGGGCTACAAGGCCGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAAGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATTGAAACTCCCCCATTGGTTATTGTTGGAGTGGTTGGCTATGTAAAAACACCTCGTGGCCTTCGCACACTCAATACCGTTTGGGCTCAGCATCTAAGTGAAGAATTAAAGAGACGATTTTACAAGAACTGGTGCAAATCTAAAAAGAAGGCCTTTACCAAATACTCAAAGAAGTATGAATCTGAGGATGGAAAGAAAGATATTGAATCTCAGCTTGAGAAATTGAAGAAGTATGCAACTGTCATTCGTGTTCTGGCTCATACTCAGATAAGGAAGTTGAAGGGTCTAAAACAGAAGAAAGCACATTTGATGGAGATCCAAGTTAATGGTGGGACAATAGAGCAGAAGGTGGACTATGCATACAGCTTTTTTGAGAAGCAAGTACCAGTGGATGCTGTTTTCCAGAAAGATGAGATGATAGATATCATTGGTGTGACTAAGGGTAAAGGTTATGAAGGTGTGGTGACTCGTTGGGGTGTGACTAGGCTTCCTCGCAAGACTCACAGAGGACTAAGGAAGGTTGCTTGTATTGGTGCATGGCACCCTGCTCGTGTTTCTTTCACTGTTGCGAGGGCTGGTCAGAACGGATATCATCATCGAACTGAGCTGAATAAGAAGATCTACAAGGTTGCCAAGGCAGGTCAAGACTCACATTCGGCCATCACTGAATTTGACAGAACTGAGAAGGAGATTACTCCAATGGGTGGATTCCCTCATTATGGTGTGGTGAAGGATGATTTTATAATGGTTAAGGGATGCTGTGTTGGACCGAAGAAGAGGGTCATCACTCTTCGTCAGTCCCTTCTGAAGCAGACATCTCGAGTGGCTCTTGAAGAGATCAAACTCAAGTTCATCGACACCTCCTCCAAGTTTGGACATGGCCGCTTCCAGACCACTCAGGAGAAACAAAAGTTTTTTGGTCGCTTGAAGGCATAA	2436	0.4417	MASMQILCACTATTQLQLHNRDRISSKKRCYSVRVVESGNGIMVLSNLEEEKKKRKLRVLVAGGGIGGLVLALAAKHRGYEVEVFEKDLSAVRGEGSHRGPIQLLSSALAVLETIDQSVACRIMEAGCVTGNRTNGLADGLSGEWFSIFDLFTPASRKRLPLTLVICRMALQDILVNAVGSNIIRNKSKVVDFIQEPSKVRVILENGEQHDGDILIGADGIWSEYFVASDVGHGKMQWYAFHGEPPSSDPLPGVIEGKKKRLLDHFGNWCNDVIELISETPEHMILQRDIYDRDMINTWGIGRVTLLGDAAHPMQPNLGQGGCMAIEDCYQLILELDKVPKHGSDGSEVISALRSYEKKRILRVRNVKNMQIKHPGLHVARALFKFTFPQFVTWMIAGHGLLAKPSFNIFSRCSAAVEFEKKMSHRKFEHPRHGSLGFLPRKRASRHRGKVKSFPRDNPSQLCRLTAFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGVVGYVKTPRGLRTLNTVWAQHLSEELKRRFYKNWCKSKKKAFTKYSKKYESEDGKKDIESQLEKLKKYATVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTIEQKVDYAYSFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVAKAGQDSHSAITEFDRTEKEITPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA	811

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g2531	811	Pfam	FAD binding domain	295	366	IPR002938	GO:0071949
	Aed7g2531	811	SUPERFAMILY	FAD/NAD(P)-binding domain	57	392	IPR036188	-
	Aed7g2531	811	Gene3D	Ribosomal protein L3, domain 3	423	696	IPR044892	-
	Aed7g2531	811	Gene3D	-	505	629	-	-
	Aed7g2531	811	Gene3D	-	226	385	IPR036188	-
	Aed7g2531	811	Gene3D	-	58	225	IPR036188	-
	Aed7g2531	811	PANTHER	60S RIBOSOMAL PROTEIN L3-RELATED	423	811	IPR045077	GO:0003735\|GO:0005840\|GO:0006412
	Aed7g2531	811	SUPERFAMILY	Translation proteins	426	792	IPR009000	-
	Aed7g2531	811	PRINTS	Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature	58	80	-	-
	Aed7g2531	811	PRINTS	Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature	316	332	-	-
	Aed7g2531	811	PRINTS	Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature	301	316	-	-
	Aed7g2531	811	Gene3D	Translation factors	466	807	-	-
	Aed7g2531	811	ProSitePatterns	Ribosomal protein L3 signature.	634	657	IPR019926	-
	Aed7g2531	811	Pfam	Ribosomal protein L3	423	792	IPR000597	GO:0003735\|GO:0005840\|GO:0006412
	Aed7g2531	811	PANTHER	60S RIBOSOMAL PROTEIN L3-LIKE	423	811	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g2531	Aed-Chr7	26974248	26982885	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g2531	423	808	Cytoplasmic Ribosomal Protein Gene Family	AT1G61580	84.715	0.0	688

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g2531	K02925		-	gmx:100792174	761.911