Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2503 ATGAGTTACGTGTTAACATGTATACTCAGATTTGGAATTCAATCACAAGGAACACCCTCATCATCTTCATATGCAGCAGCACCTTCTTCTCCTCCTCTCAGAGAAGCCCTTCCTCTAATCAACAAGATAAGCCTCACAAGTAGTAGTGAGCAACACCAACAAAATGAACCCTTCTCATCAAATGTTGTAGAGGAGGAGGACAACAACAACAAACATGAGAGTGGTGATGATGAAGAAAGTGTAACCGTTGCCCTACACATAGGGCTTCCTAGAATGGATACTTCTTCTTCTAATAATTCTGATCTGGTGCCAGTAACATCATCAAGAAGGGTGGTCATGGAAATCGGTGAAAAAGAGGAAGTGAATATGAATATGATTTCTGCAGCTGAAAAGCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCAACCCCTTCTCAGATCCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCCAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGCTGCAAGCACAACATTGACCATCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACTCTCCAAACACATTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGGTCCCTAAAAGACCACATCAAGGCCTTTGGCTATGGCCATGGTTCTTTTGGCATTGATTGCTTGCAAGATCAAGAAGATGAAGCTGCCTCTGAAATTGAACATGATGGTGGGGAGAGTTCAATGTGA 960 0.4229 MSYVLTCILRFGIQSQGTPSSSSYAAAPSSPPLREALPLINKISLTSSSEQHQQNEPFSSNVVEEEDNNNKHESGDDEESVTVALHIGLPRMDTSSSNNSDLVPVTSSRRVVMEIGEKEEVNMNMISAAEKPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGSFGIDCLQDQEDEAASEIEHDGGESSM 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2503 319 Pfam C2H2-type zinc finger 156 175 - -
Aed7g2503 319 SMART c2h2final6 240 260 IPR013087 -
Aed7g2503 319 SMART c2h2final6 156 178 IPR013087 -
Aed7g2503 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 260 IPR013087 -
Aed7g2503 319 MobiDBLite consensus disorder prediction 65 80 - -
Aed7g2503 319 MobiDBLite consensus disorder prediction 46 64 - -
Aed7g2503 319 Gene3D Classic Zinc Finger 155 178 - -
Aed7g2503 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Aed7g2503 319 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Aed7g2503 319 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 20 313 - -
Aed7g2503 319 SUPERFAMILY beta-beta-alpha zinc fingers 152 178 IPR036236 -
Aed7g2503 319 Gene3D Classic Zinc Finger 218 288 - -
Aed7g2503 319 MobiDBLite consensus disorder prediction 46 80 - -
Aed7g2503 319 PANTHER ZINC FINGER PROTEIN WIP2 20 313 IPR043584 GO:0003700|GO:0010468
Aed7g2503 319 SUPERFAMILY beta-beta-alpha zinc fingers 224 260 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2503 Aed-Chr7 26758442 26762135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2503 25 311 C2H2 Transcription Factor Family AT1G51220 60.959 6.76e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed7g2503 zf-C2H2_6 2.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2503 - - gmx:100794446 518.85