Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2501 ATGAATGATGGTAGACAAATGGGGGTGCATTACGTAGACGCTGGGTTCCCTTATGCTGCTGTCAATGAAAACTTCGTCGATTTCTTCCAAGGATTCTCGCACGTGCCAGTCAATTATGCCTTTGCTAGCTCAATGCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGCCCTGGGAGTACATCTTACTATAGTTCTTATGAGGTAAATGGCCATTTACCGAGAATGGAGATCGATAGGGCTGAGTGGGAATACCCTTCGACAATTACCACCGTGGATGAAGAACCAGCTACAACAGATTCTCCACCTAGAAGAGATGGAGTCACAAGCATGCAGACCATTCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAATAGCAGTAGCCAGGTTATATGGCAAGACAACATTGATCCTGATAATATGACTTATGAGGAACTACTGGACCTGGGAGAGGCAGTTGGGACTCAAAGCCGAGGTCTTCCCCAAGAACTTATTGATATGCTTCCAACCTCAAAGTACAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATACAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGCCATGTCTATCATGGCGAATGCATCACCAAGTGGCTCAGCATTAACAAGAAATGTCCTGTCTGCAACACTGAGGTTTTTGGCGAGGAATCAACAACGCATTAG 753 0.4382 MNDGRQMGVHYVDAGFPYAAVNENFVDFFQGFSHVPVNYAFASSMPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRAEWEYPSTITTVDEEPATTDSPPRRDGVTSMQTIPEECSPNHHESNSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLPQELIDMLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTTH 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2501 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 243 IPR013083 -
Aed7g2501 250 SUPERFAMILY RING/U-box 197 243 - -
Aed7g2501 250 SMART ring_2 198 238 IPR001841 -
Aed7g2501 250 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Aed7g2501 250 Pfam Ring finger domain 197 239 IPR001841 -
Aed7g2501 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 248 - -
Aed7g2501 250 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 248 IPR033276 GO:0004842|GO:0016567|GO:0046621
Aed7g2501 250 MobiDBLite consensus disorder prediction 101 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2501 Aed-Chr7 26720576 26728307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2501 9 247 C3H Transcription Factor Family AT3G63530 55.649 5.02e-97 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2501 K19045 - gmx:100792734 492.271