Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2496 ATGAAAGAAACGATGAAATCGCTAACTGTTAACACTGAAGATTCTTTTTCCAGTTTGCTGGAACTTGCTTCTAACAACGATATCGAAGGTTTCAAGGTGCTTTTAGAGACGGATTCGTCTTCTTCGATCAACGAGGTTGTGCTCTGGTATGGCCGGCAAAACGGATCAAAGCAATTTGTTCTCGAGCACAGAACCCCTCTGATGGTTGCTGCCACTTACGGCAGCATTGACGTGATGAAGATCATATTGTTGCGCCCCGAGGCGGATGTGAATTTCGCGTGCGGCGCAGATAAAACCACCGCCCTTCACTGCGCCTCTTCCGGTGGCTCTGCCAATGTTGTCGATGCCGTGAAGCTTCTCTTGTCGGCCGGAGCCGACGTGAATTGCGCGGACGCTAACGGGAATCGCCCCGTTGATGTGATCGCTGTTCCTCCCATGCTGCAAGACGTGAAAACCGTTCTCGAGGAACTTCTTTCGGACTGCGCCTCTGATGTGTCTGTTGGTGAATTCTCGAATTCGTACACTCCTTCTGCATCACCGCCATCTCCTGTGGTGGCAAAGTATAATGAAGCAGCTATTGCTATTGACTCTCTGTCTGAGAGGAAGGAATACCCGATTGATCCGTCGCTGCCGGATATAAAGAACAGCATATACGCAACCGATGAGTTCCGGATGTTTTCGTTCAAGGTGAGGCCTTGTTCCCGGGCGTACTCCCACGATTGGACCGAGTGTCCTTTTGTTCATCCCGGAGAGAATGCTCGGAGGAGGGACCCGAGGAAGTTCCACTACAGCTGCGTGCCCTGCCCTGAGTTTAGGAAAGGGGCTTGCAGGCGCGGAGACATGTGTGAGTATGCTCATGGCGTGTTCGAGTGCTGGCTGCACCCGGCTCAGTACCGGACACGCCTCTGCAAGGATGGCACCAGCTGCAATCGGAGGGTGTGTTTCTTTGCTCACACTGCAGAGGAACTGCGTCCGCTGTATGTCTCCACCGGATCCGCTGTCCCTTCTCCTCGATCATCCGCCTCGGCTCCTAATGTCATGGACATGGCTGCCGCGATGAGCCTTTTCCCGGGCTCTCCTTCGTCAGTCTCCTCCATGTCGCCGTCCCACTTTGGGCAACCGATGTCACTGTCTTCCGCTTGGGCACAGCCGAATGTGCCGCCGCCGGCTCTTCATTTACCAGGAAGCAATCTCCAATCCAGTCGTTTGAGGTCTTCCCTGAGTGCCCGCGACATTCCACCGGAAGGCCTGCGTGCAATGTCTGATCTCGATGGCCATCAGCAGCAGCACACTTTGAATGACTTGAGCTGTTACTTACAGCCTCGCCCCGGTGCTGGTTCCGTGGGTAGATCCGGGCGGCCCAAGACCCTAACTCCATCGAATTTGGAGGATCTGTTTTCCGCCGAGATGTGTTTGTCTCCGCGGTATTCTGATCACGCAGCGGGTTCTATGTTTTCTTCCCCCACCCACAAATCAGCTGTTCTCAATCAGTTTCAACAGCTCCAAAGTATGCTGTCGCCCATAAACACTAACTTGCTGTCTCCTAAGAGTGTTGAGCATCCTCTTTTACAGGCTTCCTATGGCGTCTCTCCTTCTGGAAGGATGTCGCCAAGAAGTGTTGAACCAATCTCCCCGATGAGCACTCGCTTATCTGCGTTTGCTCAGCGCGAGAGACAGCAGCTGCGTGGTCTCGGTTCGAGGGACCTTGGTGGTGCCAACAGTCCTGCCTCAGTTGTTGGCTCCCCTGCAAATCCTTGGTCAAAGTGGGGATCTCCTAATGGGAAGGTTGATTGGTCGGTAAACGGAGACGAGCTTGGTCGAAGATCATCCTCGTTCGAGCACAAGAACAACGGGGAAGAGCCTGATCTATCATGGGTCCAATCTCTGGTGAAGGAATCCCCACCTGAGATGATCAAAGAGAAGTTTGCATCTCCTATGCCTACTACTGTATCTGCTGATGGACCGAATTCAAATTCCCAGATTGAATCCATTGATCATTCTGTTTTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAG 2052 0.5292 MKETMKSLTVNTEDSFSSLLELASNNDIEGFKVLLETDSSSSINEVVLWYGRQNGSKQFVLEHRTPLMVAATYGSIDVMKIILLRPEADVNFACGADKTTALHCASSGGSANVVDAVKLLLSAGADVNCADANGNRPVDVIAVPPMLQDVKTVLEELLSDCASDVSVGEFSNSYTPSASPPSPVVAKYNEAAIAIDSLSERKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLFPGSPSSVSSMSPSHFGQPMSLSSAWAQPNVPPPALHLPGSNLQSSRLRSSLSARDIPPEGLRAMSDLDGHQQQHTLNDLSCYLQPRPGAGSVGRSGRPKTLTPSNLEDLFSAEMCLSPRYSDHAAGSMFSSPTHKSAVLNQFQQLQSMLSPINTNLLSPKSVEHPLLQASYGVSPSGRMSPRSVEPISPMSTRLSAFAQRERQQLRGLGSRDLGGANSPASVVGSPANPWSKWGSPNGKVDWSVNGDELGRRSSSFEHKNNGEEPDLSWVQSLVKESPPEMIKEKFASPMPTTVSADGPNSNSQIESIDHSVLGAWLEQMQLDQLVV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2496 683 ProSiteProfiles Ankyrin repeat profile. 97 132 IPR002110 GO:0005515
Aed7g2496 683 ProSiteProfiles Zinc finger C3H1-type profile. 267 289 IPR000571 GO:0046872
Aed7g2496 683 SMART ANK_2a 14 45 IPR002110 GO:0005515
Aed7g2496 683 SMART ANK_2a 62 92 IPR002110 GO:0005515
Aed7g2496 683 SMART ANK_2a 97 129 IPR002110 GO:0005515
Aed7g2496 683 Gene3D - 262 325 - -
Aed7g2496 683 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 3 681 - -
Aed7g2496 683 Pfam CCCH-type zinc finger 267 287 IPR041367 -
Aed7g2496 683 PANTHER UNKEMPT FAMILY MEMBER 3 681 IPR045234 -
Aed7g2496 683 Gene3D - 6 161 IPR036770 -
Aed7g2496 683 SUPERFAMILY Ankyrin repeat 12 154 IPR036770 -
Aed7g2496 683 PRINTS Ankyrin repeat signature 63 78 IPR002110 GO:0005515
Aed7g2496 683 PRINTS Ankyrin repeat signature 116 130 IPR002110 GO:0005515
Aed7g2496 683 MobiDBLite consensus disorder prediction 565 595 - -
Aed7g2496 683 Pfam Ankyrin repeats (3 copies) 23 131 IPR002110 GO:0005515
Aed7g2496 683 ProSiteProfiles Ankyrin repeat region circular profile. 97 131 - -
Aed7g2496 683 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Aed7g2496 683 SMART c3hfinal6 297 320 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2496 Aed-Chr7 26653096 26655147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2496 13 680 C2H2 Transcription Factor Family AT5G12850 52.841 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed7g2496 Ank_2 1.7e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2496 - - gmx:100791328 1136.71