Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2491 AACTCCTCTCGAACGTTGAGGCCCTTCGAAAAAACCACAGTGCCTCTCCACGACGACGTTGTGTTGGTGCCGTTATTGCGTTCACTACTGCTTCCTCACCTCATTTTGGAGGAGACATTCAGTGAGATTGGACCTGTCAGGCGTTGCTTCATGGTCACACAAAAAGGGTCAGCTCAGCATCGTGGTTTTGGTTATGTCCAATTAATTGGAATTTGTGACTTAGCTTTTTCTGGTTTGGTATTAATTGTTGCCATCTTTAGTGCTGTTGAGGAAGATGCTAATCGTGCTATTGAGCAAAGGCATGGTTCATTTACCGGAGACCGGAAAATTGTAGTGAAGCACGCAATGCCTCGTCCTCCCCGTGAAGAACGGAAATCAAAACCAAGTCAAGAGGGAAAGACAGATGATCTCGTGAAGCCAAAAGATGATGATGAAGACGGCAAATTATCCGAAGCTGAGAAGCCTGATTCAGTTTTGAAGGAAGAAGAAGTACAAGTTACAAGTAAACAAAAAAACTCCAGGAAATCCATGGAGACAAAAAAATCAGCTCTTTGTAATGATGTAGCAGATGAGGGTGGTTGCTCAGAAAAACAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATAAATTCTGATATGGCTGAAGAAGTTCACCGTCAAGCCAGAGAGATGGGGACTGTGTGTTCTATTAAGTACCCTCTTTCAAGGAAGGATCTTGAGCAACATGGTCTCATGCAAGATGGCTGTACTATGGATGCTTCGGCTGTACTTTATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAACGCTACATAAAAAAGAGATAGGTGGGGGAACTCTTTGGGCACGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATAATCAGAAACCTTCCTTTCAAGGCAAAAGATAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACAAAAGTCAGACACGGGTCTGTCTAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCAGAAAAGGCCATTAACAAGCTCAATGGATCAAAGTTTGCAAAACGAACCGTAGCTGTTGATTGGGCTGTTTCAAAAAAGATATTTAGCAGTGATACAAATAATGCTCTTGCCTCAGAGAAAGGACAACAACAGATGAGCGATGAGGATGGTAGTGCTACTGAGGAAGATGATAGTGATATAGACACTAGTGCTATGGAGGAAGAAGGTGCTCCTCCTGAAGATAATTTTGATAAGGAAGCAGACATTGCAAGAAAGGTTCTGAACAACTTGCTTACATCCTCGAGCAAGGGAACATCTGTAAACAATGATTTGACATTGTCCAAGGAAAACAAGGAGCTGAAATCTGATGAAATTGTTAAGGACACAGATAGAAAAACATCTGATGAGTCTGAAAAAGTTTCAGGTGTTTCTAAGGGAACAGAAGAAGATGATTTGCAGAAAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAACGAAGAAGTGAAACAACGATTTTCTGGATTTGGGGAAGTAGGATACTTTGCTCCTGTTCTCCACCAAGTTACCAAGCGACCGAGAGGGACTGGTTTTCTAAAATTTAAAACTGTAGAAGCAGCTGATACTGCAATTTCAACTGCCAGTGCTGCTTCTGGGATGGGTATTTTACTAAAGGGTAGGCCATTAAAAGTTTTAAAGGCTTTGGATAAGAAATCAGCACATGAAAAGGAACTAGAGAAAGCAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGAAAAGGAGGGACTTATTCTTGAGGGAACTACAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCAAACTTTCATGTTTCAAGAACTAGGCTCATTATCTATAACTTACCCAAGTCAATGAATGAGAAACAACTGAAGAAACTTTGCATCGATGCAGTTATCTCTAGAGCTACCAAGCAAAAACCAGTGATTCGGCAGATAAAGTTTTTGCAAAATGAAAAGAAAGGAAAGGTTGCTCAGGAACGCTATTCACGGGGAGTTGCCTTTGTTGAATTTTCGGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTCAACAATAATCCCGAAACATTTGGTTCTGAACATCGGCCAATCGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGCAGGCAAAGCTACAATCTCAGCAGCAGGCTCCTCAAGGTGACAACAATGTCATGGAAAATGAAAAACCTGGCATGGTAGAAGGTCGCAAGCCTGTAAATGACAGAAAACGAAAATCTCAAGAGCACGACAAACTGGCAAAGGAAGCAGTACTGAATACATATAGTGAATCAGATGGTACAGTGGCAAATGGAAAATCCCCTCAAGGACAGTTCAAAAGACAGAAAGGCAACAACAACAAGAGTAAGAGGCCACTGAAAGAAAATCCAGAAGCCTTGTCCATGAAGCCAAAGAGTAACCAAAATGGCCCTAACAATGGTGGTGCATCTCTTGAAATTCAGAACACTGCCACTGACACTAATAGAAGAAAATCAGGGAACAAAGATGATGTTGTGGGGTTTAGAAAAAGAAAGATGCAAAACCAAGAACAAGAAGCAGCAGGCCAAACGATTTCTAAGAAACGGCCTAAGAAGAATAAAGGTTCAGTAGGGAAGGAAGAAGTGGATAAGCTTGACAGGCTTGTAATACAATATATATCCAAGTTCTCACACAAGGGTTCCCAAGAGAATGATGGAGAGAAAAAACCTTCTAAGCAGCTTAGGAAATGGTTCCAGTCATAG 2880 0.4142 NSSRTLRPFEKTTVPLHDDVVLVPLLRSLLLPHLILEETFSEIGPVRRCFMVTQKGSAQHRGFGYVQLIGICDLAFSGLVLIVAIFSAVEEDANRAIEQRHGSFTGDRKIVVKHAMPRPPREERKSKPSQEGKTDDLVKPKDDDEDGKLSEAEKPDSVLKEEEVQVTSKQKNSRKSMETKKSALCNDVADEGGCSEKQRVARTVIFGGLINSDMAEEVHRQAREMGTVCSIKYPLSRKDLEQHGLMQDGCTMDASAVLYTSVKSARASVATLHKKEIGGGTLWARQLGGEGSKTQKWKLIIRNLPFKAKDNEIRDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAEKAINKLNGSKFAKRTVAVDWAVSKKIFSSDTNNALASEKGQQQMSDEDGSATEEDDSDIDTSAMEEEGAPPEDNFDKEADIARKVLNNLLTSSSKGTSVNNDLTLSKENKELKSDEIVKDTDRKTSDESEKVSGVSKGTEEDDLQKTVFISNLPFECDNEEVKQRFSGFGEVGYFAPVLHQVTKRPRGTGFLKFKTVEAADTAISTASAASGMGILLKGRPLKVLKALDKKSAHEKELEKAKNEVHDHRNLYLEKEGLILEGTTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLIIYNLPKSMNEKQLKKLCIDAVISRATKQKPVIRQIKFLQNEKKGKVAQERYSRGVAFVEFSEHQHALVALRVLNNNPETFGSEHRPIVEFALDNVQTLKLRQAKLQSQQQAPQGDNNVMENEKPGMVEGRKPVNDRKRKSQEHDKLAKEAVLNTYSESDGTVANGKSPQGQFKRQKGNNNKSKRPLKENPEALSMKPKSNQNGPNNGGASLEIQNTATDTNRRKSGNKDDVVGFRKRKMQNQEQEAAGQTISKKRPKKNKGSVGKEEVDKLDRLVIQYISKFSHKGSQENDGEKKPSKQLRKWFQS 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2491 959 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 498 765 - -
Aed7g2491 959 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 36 430 - -
Aed7g2491 959 MobiDBLite consensus disorder prediction 875 895 - -
Aed7g2491 959 MobiDBLite consensus disorder prediction 913 927 - -
Aed7g2491 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 368 IPR000504 GO:0003723
Aed7g2491 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 558 IPR000504 GO:0003723
Aed7g2491 959 MobiDBLite consensus disorder prediction 756 770 - -
Aed7g2491 959 MobiDBLite consensus disorder prediction 939 953 - -
Aed7g2491 959 SUPERFAMILY RNA-binding domain, RBD 498 728 IPR035979 GO:0003676
Aed7g2491 959 Coils Coil 576 603 - -
Aed7g2491 959 SUPERFAMILY RNA-binding domain, RBD 36 131 IPR035979 GO:0003676
Aed7g2491 959 MobiDBLite consensus disorder prediction 847 874 - -
Aed7g2491 959 MobiDBLite consensus disorder prediction 466 491 - -
Aed7g2491 959 Gene3D - 484 589 IPR012677 -
Aed7g2491 959 CDD RRM2_RBM28_like 298 374 - -
Aed7g2491 959 MobiDBLite consensus disorder prediction 807 829 - -
Aed7g2491 959 CDD RRM4_RBM28_like 650 747 - -
Aed7g2491 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 581 IPR000504 GO:0003723
Aed7g2491 959 MobiDBLite consensus disorder prediction 756 959 - -
Aed7g2491 959 SUPERFAMILY RNA-binding domain, RBD 90 283 IPR035979 GO:0003676
Aed7g2491 959 SUPERFAMILY RNA-binding domain, RBD 293 378 IPR035979 GO:0003676
Aed7g2491 959 MobiDBLite consensus disorder prediction 108 181 - -
Aed7g2491 959 PANTHER RNA BINDING PROTEIN 498 765 - -
Aed7g2491 959 PANTHER RNA BINDING PROTEIN 36 430 - -
Aed7g2491 959 MobiDBLite consensus disorder prediction 400 425 - -
Aed7g2491 959 CDD RRM3_RBM28_like 498 579 - -
Aed7g2491 959 SMART rrm1_1 499 577 IPR000504 GO:0003723
Aed7g2491 959 SMART rrm1_1 298 371 IPR000504 GO:0003723
Aed7g2491 959 SMART rrm1_1 651 742 IPR000504 GO:0003723
Aed7g2491 959 MobiDBLite consensus disorder prediction 386 428 - -
Aed7g2491 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Aed7g2491 959 Gene3D - 35 150 IPR012677 -
Aed7g2491 959 Gene3D - 286 412 IPR012677 -
Aed7g2491 959 MobiDBLite consensus disorder prediction 777 803 - -
Aed7g2491 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 650 758 IPR000504 GO:0003723
Aed7g2491 959 Gene3D - 649 744 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2491 Aed-Chr7 26602461 26611595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2491 301 376 Eukaryotic Initiation Factors Gene Family AT3G11400 34.211 5.38e-10 60.1