Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2490 TTTCATTTTGTGAAACCAGGATTTTCCCCTGGCACTGACAGAGGCAAGAGACAGAAGTTATCAAGTGTTGTGGAGCACGGAAGTCCATTCGCAGTTACTGATCTGGATCGTACAGAGCATGGAAAATATGGAAGTGTCACAAAGGACATAGAGGGCCTTGTAGCCCGAAGAAGGAAGGTACTTGCACCTTACTTTGCAAAGTATCCCAGACTTTTGTTCAATGTGGTAACAGACCGCAATGAAGAAACTCCTAAGTTAGAAGAACAACAAGTTACTGGTTTGATACATCAAAATGTCATAGATTTTGAAACTCCCAAGTTACAAGATCATCAAGTTACTGGTTTGACACATCAAAATGCCATAGATTTGGAAACTCCCAAGTTAGAAGATCAACATGTTACTGGTTTGACACATCAAAATGTCATAGATTTGGAGGGGAGAAACACTGAGAAGGATGTTCATGCAGCACCAATTCATGATGTGATTCCCATTGATTCAGATGAGGAAGATGATAGAGATAAAAAATCTATTGTTTTATATGAAGCTTCAGATTTGGAAGATGATAAAGATAAAAAAATTAATGTTCCATTTCATGAAGTTGTATTGTCGAGACTAGTTGCACCGTCACCTGCATCTAAGAAGATTGAGTACCACACTCCCATTCCTTACCATGGAGAAAACGAAGATCTAAAAGTTGAGACAAGTACTGCTGGTAAAGGTGACACTAGGGGAGATAAAGGTGTCTATGTGGGTGTACAGGAGGAAAAGGATCATCAGGTTGATACAGCACATGATGATGATCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTTCTGTGAATCCTCTGCCAGATGAAGAAGCAATAAGAAATGAAGACTGTGATCATTCTTTTGTTTTAAAGGATGATCTTGGTTATGTTTGTCGTGTTTGTGGCATTATTGACCGAGGAATTGAAACTATATTTGAGTTCCAGTACAAGGTTAAACGGAGCACAAGGACTTATGCATCTGATTCATGGAATCCCAAAGCAAAAGCAGATGTATATGGCATTAATGTTGCTAAAGATGATTTCATGCTAACTGAATTCTCAGCACATCCAAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCGGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATACAAAGTTTTCTAGGAAAGTATCCTACTGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCTACATGGAAAAAGGAGTTTCAAACATGGCAAGTGGAGGACATACCTTTGTATGACTTTTACTCAGTGAAGGCAGATAATAGAAGTCAACAACTAGAAGTGTTGAAACAATGGGTGGAGCATAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATGATGGGACCAACAGTGCATCTTTATCTTGCAAAAATATTCTACTGAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACATAATCCAAGGAATGAAAACACGGATATGGTACAATCCCTTGTAGAAGTTCAAACCCCTAGAAAAGTTGTACTGTCAGGAACACTTTATCAAAATCATGTTAAGGAGGTGTTTAACATCTTAAATCTTGTTCGGCCAAAATTTTTGAGGATGGAAACATCTAAGTCTATTGTCAAGCGCATTGAAAGTAGAGTGCACATACCGGGGAAAAACTTCTATGATCTAGTTGAAAACACTTTGCAGAAGGACACAGATTTTAGAAGGAAAATAGCTGTCATAAAAGATTTGCGTGAGATGACAGGCAATGTCCTTCACTATTATAAAGGGGATTTTCTTGATGAGCTTCCTGGTCTTTTTGATTTTACTGTGGTACTCAATCTTAGCCCTAGGCAGAAGCTTGAAGTTGAAAAGTTAAAAAGGTTATCTGGAAATTTTAAGAAATCTTCTGTAGGCAGTGCTGTCTATTTGCACCCTAAACTGAAACCTTTAGCTGAAAAGGGTGAAAAAAGTATATCTGAATCTGATAACATGATTGATGATCTGATAGAGAAACTGGACGTGAGAGATGGTGTGAAGTCCAAATTCTTTCGGAACATGCTAAATTTGTGTGAATCAACTGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCTTTGAAATATTTAGAAAGGTTAACCATGAAATGGAAAGGCTGGAGTCTAAAAAGAGAAATCTTTGTAATCTCAGGAGAAACAAGCTCTGAGGACCGAGAATGGTCAATGGAAAGATTTAACAATTCTTCTGATGCCAAAGTCTTCTTTGGCTCGATCAAGGCTTGTGGAGAGGGCATATCATTGGTTGGGGCATCCCGCATAATTATTTTGGATGTTCATCTCAATCCTTCTGTTACTCGCCAAGCTGTTGGTCGTGCATTCAGACCAGGCCAGAAGAAGAAAGTCTTCGTGTATCGATTGGTATCTGCTGATTCTCCTGAAGAGGAAGATCACAGTATTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGCAATCGAGCTTATGAAGTTGAGGAAGTTGGGGTGAAAGAGTGTGGTGATCTATTTCTTGAAAGTCCACTGTTAGGGGAGGATGTAAAAGCTTTGTATAAAAGGTTAGTGACCATTCTTTCCCTTTTTGTTGCATATCATACATGTGATTTATTGATCTCCTCTCCCACTCTCTGGGATAGGGGTGGAGACTTAGAGTGTGTTGAATTTTCTGAACTTTGTAGTAATCCTTTTAGTCATGTTTTTTGCTTCATTTATGTGTGGTTATGA 2898 0.3858 FHFVKPGFSPGTDRGKRQKLSSVVEHGSPFAVTDLDRTEHGKYGSVTKDIEGLVARRRKVLAPYFAKYPRLLFNVVTDRNEETPKLEEQQVTGLIHQNVIDFETPKLQDHQVTGLTHQNAIDLETPKLEDQHVTGLTHQNVIDLEGRNTEKDVHAAPIHDVIPIDSDEEDDRDKKSIVLYEASDLEDDKDKKINVPFHEVVLSRLVAPSPASKKIEYHTPIPYHGENEDLKVETSTAGKGDTRGDKGVYVGVQEEKDHQVDTAHDDDLEDIWKEMSMAIECSKDVSVNPLPDEEAIRNEDCDHSFVLKDDLGYVCRVCGIIDRGIETIFEFQYKVKRSTRTYASDSWNPKAKADVYGINVAKDDFMLTEFSAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFIQSFLGKYPTARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYSVKADNRSQQLEVLKQWVEHKSILFLGYKQFSSIVCDDGTNSASLSCKNILLKVPSILILDEGHNPRNENTDMVQSLVEVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLRMETSKSIVKRIESRVHIPGKNFYDLVENTLQKDTDFRRKIAVIKDLREMTGNVLHYYKGDFLDELPGLFDFTVVLNLSPRQKLEVEKLKRLSGNFKKSSVGSAVYLHPKLKPLAEKGEKSISESDNMIDDLIEKLDVRDGVKSKFFRNMLNLCESTGEKLLVFSQYLLPLKYLERLTMKWKGWSLKREIFVISGETSSEDREWSMERFNNSSDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAVGRAFRPGQKKKVFVYRLVSADSPEEEDHSICFKKELISKMWFEWNEYCGNRAYEVEEVGVKECGDLFLESPLLGEDVKALYKRLVTILSLFVAYHTCDLLISSPTLWDRGGDLECVEFSELCSNPFSHVFCFIYVWL 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2490 965 Gene3D - 645 898 IPR027417 -
Aed7g2490 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 874 IPR027417 -
Aed7g2490 965 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 721 887 IPR001650 -
Aed7g2490 965 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 15 911 IPR044567 GO:0080188
Aed7g2490 965 SMART ultradead3 376 590 IPR014001 -
Aed7g2490 965 Pfam SNF2-related domain 400 577 IPR000330 GO:0005524|GO:0140658
Aed7g2490 965 Gene3D - 350 598 IPR038718 -
Aed7g2490 965 PANTHER PROTEIN CHROMATIN REMODELING 35 15 911 - -
Aed7g2490 965 CDD SF2_C_SNF 709 846 - -
Aed7g2490 965 Pfam Helicase conserved C-terminal domain 726 834 IPR001650 -
Aed7g2490 965 MobiDBLite consensus disorder prediction 1 21 - -
Aed7g2490 965 SMART helicmild6 750 835 IPR001650 -
Aed7g2490 965 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 394 573 IPR014001 -
Aed7g2490 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 591 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2490 Aed-Chr7 26595110 26599913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2490 732 863 RAD5 or RAD16-like Gene Family AT5G43530 33.333 1.51e-14 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed7g2490 SNF2_N 7.3e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2490 K10875 - gmx:100795356 1476.07