Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2485 ATGCCTAGAAATTCTGGCAGTAATTATTATCACGGGGAGGAGATTCAGTTTCAGTCTTCCATTTACTCTCCTCCTCCGCCTTGGTGGCACGGAATGGAAAAAAATGCCTCCAATTCAACTTCAGCTCAGTTAAATGAATCAATCATGCCAACTTCAGCTGATCAATTAAACGTGAATGGTCTCGCACTGTGTAAGACTAATGAAGTCTTAGCTGATGGCATTGATTTCGGTAAGCAAATACAGCCTTTGGTTTCTCCTTCATTGCATGGCACTGATAAGTCAAGTGTCTGTATTTTGGCTGCTGCAATAGATTCTAATTGTGTTCAAAGTGCAGGTGTTGCTGAACATAATGTGTGGTCAACCCCATATACCATGGACATGCATCTTGCACCAAATCCCCCCATGGAGCTTGTTGGCCATTCAGTTATAACCCCTCAGGTGTATGGCATGCATCATGGTAGAATGCCTTTGCCTCCTGAAATGGAAGAGGAGCCTGTTTACGTGAATGCAAAACAGTATCATGGCATTTTGAGGCGAAGACGTTCACGTGCTAAGGCAGAGTTTGAAAGGAGAGTAATTAGAAACAGGAAGCCATACCTCCATGAATCCCGTCACCTTCACGCCATGAGAAGGGTAAGAGGCATAAGTGGTCGCTTCCTCAACACAAAGAAGCTCAAAAAAAACACTTATGTGACTCCATCTGGCATTGTCATATGGAAACACCTGATGGAACCACACAAGCATTTTTGTAACAGAAAGACAAAAGCTGAAAGTCCCACCGACCAAGTCCAAATTTGGATTCTGAAGGCGGCATGTGATCAGAACAACTTCATCTTCCTCCTCCCAAGCATTGGCTGA 858 0.4394 MPRNSGSNYYHGEEIQFQSSIYSPPPPWWHGMEKNASNSTSAQLNESIMPTSADQLNVNGLALCKTNEVLADGIDFGKQIQPLVSPSLHGTDKSSVCILAAAIDSNCVQSAGVAEHNVWSTPYTMDMHLAPNPPMELVGHSVITPQVYGMHHGRMPLPPEMEEEPVYVNAKQYHGILRRRRSRAKAEFERRVIRNRKPYLHESRHLHAMRRVRGISGRFLNTKKLKKNTYVTPSGIVIWKHLMEPHKHFCNRKTKAESPTDQVQIWILKAACDQNNFIFLLPSIG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2485 285 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 143 233 IPR001289 GO:0003700|GO:0006355
Aed7g2485 285 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 219 IPR001289 GO:0003700|GO:0006355
Aed7g2485 285 PRINTS CCAAT-binding transcription factor subunit B signature 165 187 IPR001289 GO:0003700|GO:0006355
Aed7g2485 285 PRINTS CCAAT-binding transcription factor subunit B signature 196 219 IPR001289 GO:0003700|GO:0006355
Aed7g2485 285 Gene3D - 162 223 - -
Aed7g2485 285 ProSiteProfiles NF-YA/HAP2 family profile. 162 222 IPR001289 GO:0003700|GO:0006355
Aed7g2485 285 ProSitePatterns NF-YA/HAP2 subunit signature. 167 187 IPR018362 GO:0003677|GO:0016602
Aed7g2485 285 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 143 233 - -
Aed7g2485 285 SMART cbf3 161 222 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2485 Aed-Chr7 26545466 26551180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2485 110 238 CCAAT-HAP2 Transcription Factor Family AT3G20910 49.624 2.17e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed7g2485 CBFB_NFYA 5.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2485 K08064 - gmx:100782085 208.379