Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2478 ATGCCGAAGACCAGCCACAGCCACAGCCACAGCCACTTCATTCATCCACACTTATTACTACTCTTGCTACTCCTACTGCCTTCTAACGCACATTGCTCCAAACTCCAACGCCGTCATCTTCCTCCGTTAGTTTTCGCCGACGCTTCCGCCCTCCTCGCGTTCAAGCTCAAAGCCGACGTCAACAACCACCTCGACTTCTCCCCCCTCACGCGCGGCCTCCACTTCTGCGCATGGCAAGGCGTCGAATGCAGCAATGGACCCAAAGTGGTGCGTCTCGTCCTCCAAAACTTAGATCTCGGAGGCGCGTGGTCTCCCAACACACTCACGCGTCTCGACCAGCTCCGAGTCCTCAGCTTGCAGAACAACTCACTCACCGGACCCATACCGGACCTCACCGGTCTCTTCAATCTCAAAAGTATCTTCATCGATAACAACCACTTCACCGGTTCTCTTCCTCCCTCCCTCTTCTCTCTCCACCGTCTCCGAAACTTGGATTTCTCTCACAATAATTTCTCAGGACCTATCTCCGCTGCCTTCACCAACCTAGACCGTCTCCACAGCCTCCGTCTCAGCTTCAACGTCCTCAACGGTTCAATCCCTCCGTTTAACCAATCCTCTCTCAAATTCTTTGAAGTCTCTGGCAACAACCTCTCTGGCGCGGTTCCGGTGACGCCGACGCTGTTCCGTTTTCCGCCTTCTTCCTTCGCCTTCAACCCTAACCTCTGCGGCGAAATCATCCGCGTGCAATGCCGTCCCGCGCAGCCTTTCTTCGGACCCGCGACGCCACCTACGGCGGCGCTCGGTCAGAGCGCGCAGGTGCACGGCGTTAACGGTATAATCCGGCAGCCGTACGAGAAGAAGCGCCACGACCGGAGGGCGCTGATTATCGGTTTCTCGGCGGGAATATTCGTTCTGGTTTGTTCGTTGGTGTGCTTCGCGGCGGCGGTGAGGAAGCAGAGGAGTCGAAACAATAAGGACGGGAGGTCAGGGATGATGGCGGCGGACGCGGCGGCGACGGCGGAGGCAGCGGCGGTGATGCGGATGGAGATGGAGAGGGAGCTGGAGGAGAAGGTGAAGAGAGCGGAGGTGGCGAAGAGTGGGAGCTTGGTATTCTGTGCGGGAGAGGCGCAGGTGTATACGCTGGACCAGTTGATGAAGGGTTCAGCGGAGCTTCTAGGGAGAGGGTGTTTGGGAACAACTTATAAGGCGGTTCTCGAAAACCGTGTGATGGTGACGGTGAAGAGGCTTGATGCTGGAAAAATGGCATCACATGCAACAAAGGAAGTGTTCGAGCGGCACATGGAATCCGTTGGGGGGCTTCGACACCCTAATTTGGTTCCGCTTAGGGCTTATTTTCAGGCGAAGCAAGAGAGGCTCATTATCTACGACTTCCAACCCAATGGCAGCCTCTTCTCCCTTATACACGGTTCAAGATCAAGCAGGGCAAGGCCATTGCATTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAAGGTCTGGCTTTCATCCACCAGGCATGGAGATTGGTCCATGGCAATCTCAAGTCCTCCAATGTTCTCCTTGGGCCAGATTTTGAGGCATGCATTACAGATTACTGCCTTTCAGTGTTGACGCACCCATCCATATTTGATGAAGATGGGGATTCAGCAGCATACAGAGCTCCGGAAACTCGCAACCCAAATCATAACCCAACCCACAAATCCGATGTTTATGCCTATGGGATTTTGTTGCTTGAGCTTCTGACGGGGAAATTTCCCTCTGAGCTCCCATTCATGGTTCCTGGTGATATGTCAAGTTGGGTGAGGTCCATCAGGGATGACAATGGTAGCGAAGATAACAGAATGGACATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACCTCACCCGAGCAGAGGCCAACTATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTACTATTGGAGGATACTAGTGATTTGGACCTACGCTGTAGTAAGGCCATGCCTTAG 2007 0.5366 MPKTSHSHSHSHFIHPHLLLLLLLLLPSNAHCSKLQRRHLPPLVFADASALLAFKLKADVNNHLDFSPLTRGLHFCAWQGVECSNGPKVVRLVLQNLDLGGAWSPNTLTRLDQLRVLSLQNNSLTGPIPDLTGLFNLKSIFIDNNHFTGSLPPSLFSLHRLRNLDFSHNNFSGPISAAFTNLDRLHSLRLSFNVLNGSIPPFNQSSLKFFEVSGNNLSGAVPVTPTLFRFPPSSFAFNPNLCGEIIRVQCRPAQPFFGPATPPTAALGQSAQVHGVNGIIRQPYEKKRHDRRALIIGFSAGIFVLVCSLVCFAAAVRKQRSRNNKDGRSGMMAADAAATAEAAAVMRMEMERELEEKVKRAEVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGCLGTTYKAVLENRVMVTVKRLDAGKMASHATKEVFERHMESVGGLRHPNLVPLRAYFQAKQERLIIYDFQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLAFIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLSVLTHPSIFDEDGDSAAYRAPETRNPNHNPTHKSDVYAYGILLLELLTGKFPSELPFMVPGDMSSWVRSIRDDNGSEDNRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDTSDLDLRCSKAMP 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2478 668 SUPERFAMILY Protein kinase-like (PK-like) 390 649 IPR011009 -
Aed7g2478 668 Pfam Protein tyrosine and serine/threonine kinase 390 644 IPR001245 GO:0004672|GO:0006468
Aed7g2478 668 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 16 656 - -
Aed7g2478 668 ProSiteProfiles Protein kinase domain profile. 386 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed7g2478 668 Gene3D Phosphorylase Kinase; domain 1 349 464 - -
Aed7g2478 668 SUPERFAMILY L domain-like 46 225 - -
Aed7g2478 668 ProSiteProfiles Leucine-rich repeat profile. 113 135 IPR001611 GO:0005515
Aed7g2478 668 Pfam Leucine rich repeat 136 195 IPR001611 GO:0005515
Aed7g2478 668 Gene3D Ribonuclease Inhibitor 46 241 IPR032675 -
Aed7g2478 668 Gene3D Transferase(Phosphotransferase) domain 1 466 659 - -
Aed7g2478 668 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2478 Aed-Chr7 26499549 26504715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2478 47 655 Receptor kinase-like Gene Family AT5G43020 56.869 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed7g2478 Pkinase 1.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2478 - - gmx:100817172 1180.24