Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2473 ATGGCGCAAATTCCTGAGAACCCCACTATTGACGCGGCGGCGGTCGCTGCCGTTGCGAACCCGTCGCTGACCACCATCTCGTTGTACGTCGGGGATCTTGACCATGACGTCAGCGATCCGCAGCTCTATGATGTCTTCAACCAGGTTGGCCAAGTCGTTTCCGTTCGAATTTGCAGAGACGTCGCCACCCAACAATCCCTTGGTTACGGCTACGTCAATTTCAGTAACGCTCATGATGCCGCAAAATCAATTGAAGTGCTAAATTTCACTCTGCTGAATGGCAAACCCATTAGGATAATGTACTCTCTCCGTGACCCTAGTGCTCGGAAGAGTGGTGCAGCCAATGTTTTCATAAAGAATTTGGACAAGGCAATCAATCACAAGGCTCTACACGATACATTTTCGGCTTTTGGGAATATTCTATCCTGCAAGATTGCGACGGATGCTTCTGGCCACTCTAAAGGCCATGGTTTTGTACAGTTTGAGAATGAGGAATCTGCACAAAACGCAATTGACAAGTTAAATGGCATGCTGATCAATGATAAACAGGTCTATGTGGGTCCTTTCCTGCGGAGGCAGGATAGGGAGAATGCTCTCATCGGTGCAAAGTTTAACAACGTTTATGTGAAAAATCTGTTGGAGTCAACGACGGATGCTGACTTGAAGGGAATTTTTGGAGAATATGGAGCTATAACTAGTGCTGTAGTGATGAGAGATGTAGATGGTAAATCAAAATGTTTTGGTTTTGTCAATTTTGCAAATGCAGATGATGCAGCTACAGCCGTGGCGGCTCTTAATGGAAAGAATTTTGATGGTAAGGAGTGGTATGTTGGAAAAGCTCAGAAAAAATTTGAAAGGGAGCTTGAACTGAAAGGGCGACATGATCAGAGCACAGTTGAGGCTGTTGATAAATATCATGGTACAAACTTGTATATCAAGAACTTGGACGATAGTGTTGGTGATGAAGAACTCAAGGGACTCTTCTCTGAGTTTGGTATGATAACCTCATGCAAGGTTATGCGAGATCCAAATGGAATTAGTAGAGGATCTGGATTTGTTGCATTTTCAACTGCTGAGGGAGCAACTCGGGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGATAGAAGAGCAAGGTTACAGGCACAATTTTCACAAGGGAGGCCTGTTGCAATATCCCCAACTGTTTCACCTCGAATGCCACTATACCCTCTAGGGGCTCCTGGAGTAGGCCAACAATTTTTGTATGGGCAAGCACCTCCAACCATCATACCTCAAGCTGCATTTGGTTATCAGCAGCATTTTGTTCCTGGAATGAGGCCGGGTGGTGCTCCAAACTTCTATGTTCCACTGGTTCAGCATCAGCAGGGTCAACAGGGGCAGCGCCCTGGAGGACACCGAGGAGCAGGTCCTATGCAACAGCTCCAGCAGCCACTGCCATTGATGCACCAACAGATGCTTCCAAGGGGTCATGTCTATCGATATCCTCCTGCCTCCAATATGCAACTGGCAGGAGTATCTGGAGGAATGGTATCTTATGGCATTAATCAGCCAATGCCCATTCAGGCCCTGGCCACTTCCCTTGCCAATGCTACTCCTGATCAGCAGAGGACTATGCTTGGTGAAGTTTTGTACCCGTTAGTAGATAAGCTGGAGCATGAAGCAGCAGCAAAGGTTACTGGTATGCTTTTAGAGATGGACCAGCCTGAGGTATTACATCTGATTGAATCACCAGATGCTCTCAAGGCAAAGGTTGCTGAGGCCATGAATGTGTTGAGAAAAGTTACACCGCAGCAATCAAACAGCCCAGCCGATCAACTGGCTTCACTCTCTCTGACTGATAATCTTGAGTCTTAG 1896 0.4657 MAQIPENPTIDAAAVAAVANPSLTTISLYVGDLDHDVSDPQLYDVFNQVGQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKSIEVLNFTLLNGKPIRIMYSLRDPSARKSGAANVFIKNLDKAINHKALHDTFSAFGNILSCKIATDASGHSKGHGFVQFENEESAQNAIDKLNGMLINDKQVYVGPFLRRQDRENALIGAKFNNVYVKNLLESTTDADLKGIFGEYGAITSAVVMRDVDGKSKCFGFVNFANADDAATAVAALNGKNFDGKEWYVGKAQKKFERELELKGRHDQSTVEAVDKYHGTNLYIKNLDDSVGDEELKGLFSEFGMITSCKVMRDPNGISRGSGFVAFSTAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQGRPVAISPTVSPRMPLYPLGAPGVGQQFLYGQAPPTIIPQAAFGYQQHFVPGMRPGGAPNFYVPLVQHQQGQQGQRPGGHRGAGPMQQLQQPLPLMHQQMLPRGHVYRYPPASNMQLAGVSGGMVSYGINQPMPIQALATSLANATPDQQRTMLGEVLYPLVDKLEHEAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMNVLRKVTPQQSNSPADQLASLSLTDNLES 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2473 631 CDD RRM2_I_PABPs 112 188 IPR045305 -
Aed7g2473 631 Pfam Poly-adenylate binding protein, unique domain 541 605 IPR002004 GO:0003723
Aed7g2473 631 Gene3D - 114 187 IPR012677 -
Aed7g2473 631 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 27 606 IPR006515 GO:0003723
Aed7g2473 631 PANTHER POLYADENYLATE-BINDING PROTEIN 19 615 - -
Aed7g2473 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 275 IPR000504 GO:0003723
Aed7g2473 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Aed7g2473 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Aed7g2473 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 378 IPR000504 GO:0003723
Aed7g2473 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 282 IPR000504 GO:0003723
Aed7g2473 631 PANTHER RNA BINDING PROTEIN 19 615 - -
Aed7g2473 631 CDD RRM4_I_PABPs 307 385 - -
Aed7g2473 631 Gene3D - 292 394 IPR012677 -
Aed7g2473 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 186 IPR000504 GO:0003723
Aed7g2473 631 SUPERFAMILY RNA-binding domain, RBD 27 194 IPR035979 GO:0003676
Aed7g2473 631 SMART poly_2 545 608 IPR002004 GO:0003723
Aed7g2473 631 MobiDBLite consensus disorder prediction 609 631 - -
Aed7g2473 631 CDD RRM1_I_PABPs 27 106 - -
Aed7g2473 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Aed7g2473 631 SUPERFAMILY PABC (PABP) domain 486 622 IPR036053 GO:0003723
Aed7g2473 631 Gene3D - 200 291 IPR012677 -
Aed7g2473 631 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 533 610 IPR002004 GO:0003723
Aed7g2473 631 SMART rrm2_1 309 381 IPR003954 GO:0003676
Aed7g2473 631 SMART rrm2_1 27 100 IPR003954 GO:0003676
Aed7g2473 631 SMART rrm2_1 115 187 IPR003954 GO:0003676
Aed7g2473 631 SMART rrm2_1 206 278 IPR003954 GO:0003676
Aed7g2473 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 385 IPR000504 GO:0003723
Aed7g2473 631 SMART rrm1_1 206 278 IPR000504 GO:0003723
Aed7g2473 631 SMART rrm1_1 27 100 IPR000504 GO:0003723
Aed7g2473 631 SMART rrm1_1 115 187 IPR000504 GO:0003723
Aed7g2473 631 SMART rrm1_1 309 381 IPR000504 GO:0003723
Aed7g2473 631 Gene3D - 18 113 IPR012677 -
Aed7g2473 631 Gene3D - 529 609 - -
Aed7g2473 631 SUPERFAMILY RNA-binding domain, RBD 205 389 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2473 Aed-Chr7 26433039 26437046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2473 3 626 Eukaryotic Initiation Factors Gene Family AT4G34110 63.349 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2473 K13126 - gmx:100799386 1055.05