Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2463 ATGCAAGGGCAGAGAGGTACAGTGAGTTCAATGCCTGATACCTTAGAATTTGATTGTGGATCTACACAAGGTAATTCTACTGTCGATCACCAGATTTGCTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTATCTCCTGGTGATATGAACTCATCTTATGGAAATTCTATTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTCCAAGTAATACACCAAATGAGATTAACAATAATGAGCAAAAATCATCAACCATTAATGCTGGTGCATTGGCTGGTCCAAGACTAGATGATAGGCACCTTGAACCAACTAATGCACTTTCACTAGACAATGTCAATGCTGGTCCTATGTACACCCGTAGCCCCAATTCCCGTTTGATGCCCCAGAATCTCAACTTGAATGCAGGTTTAGCAGACAGTGGAAGTGATAATAGTCAACATCTGGATCTCCCTAACTTAAACAAGTCTAGTGGGTCAGTAAATGAATGTGCACTGCCTCATGTTGGATCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGGCTTCCTGGTAGAAGGTACTGATGGTAGGCCAGGTCTTCAGATGCTATCTCGACGTGTCTCTTGTAAAAGAAAGGCTGTTGAAGGAAATAATGGACAATCTTCAGATGTTGGGAGTTCTAGCTACAGTCAGTATACAGATGGTAGTGCTTGGCACACAATTCCTACTCAGGATAATGCTGGAAGCAGTTCAAGCAGATCTATTTCCACAGAACCGGTAAATGCAAGACTTGGCCTGGGTATGCGGAATGAAGCATCTGAAAATGTTCCTGATTCAAACATTGCAGGAAGCTCCGAAAGCTTTCACAGGAATTCCCGTTTGAGATTAAATCCTTCAAACCCACAGAATGCCTCTCATCCCACTGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGTGTTTCTTCTTCCTCTCAAGTATCACAAAGGTTTCATCGTGTTGATAATTCTCTGAACTTGAGGTCAGCACCACCAATAGATAATGTGGTTTCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGACAATCAATTAGATGGAGTGGTGGTTCTAGCTCCAGAAACATCCATTCATCAAACTCAATGATATGTGCAGACAGGGAGCAGGAGGATGCAAGCTCAAGAAGAATGTCTAGAAATATCTTAGAACATCCAGTTTTCGTACCTGCTACTGATTTAAGAAATTTAGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAGTTCAAGTATTCCAGGAAATGTTGCTTCTTCGTCACGGACTGGATCAAATCCAGCTACCAATCCCTCATCTGCCCCAACTTGGGTTTCTCGTCCTAATCCTGCACAGCATCCATGGAGGTTATCTGAATATGTCCGCCGGTCCTTGTTTTCTCCTGGTTCGGATGCTATTGGAAGTCCAAGCAATAATTATTCTTCCTTGCAGTCTGGTCTTTCTACATCTGAACCAAGGGCGTTATCATTTGGGAGTGGGGCAAACCCAAGATCATCTTCATGGTTGGAGAGGCAAGGAGATAGTGAATTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTTTTGGGTCTTATGCGTAGAGGAGGGAATGTGCGATTTGAGGAGTTGTTGGCTCTGGAAGAGCGTATTGGAAATGTGAGTACTGGATTGAGTGAGGAAATCGTATTGAAACTCTTGAAACAGAGAAAGCACTCGGTTGAGAAAGGGTCTCAGGCTGATGCAGAACCCTGTTGTGTTTGTCAGGAGAATTATGGTGATGGGGATGATGTTGGAAAGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATCAAAGAGTGGCTAATGCAAAAGAATCTGTGTCCCATTTGTAAGACAGCGGGCTTGACAGCATGA 2010 0.4274 MQGQRGTVSSMPDTLEFDCGSTQGNSTVDHQICWNNVNPAENQIPDYILSPGDMNSSYGNSIINHEWQNLSGWSLGEPSPSNTPNEINNNEQKSSTINAGALAGPRLDDRHLEPTNALSLDNVNAGPMYTRSPNSRLMPQNLNLNAGLADSGSDNSQHLDLPNLNKSSGSVNECALPHVGSGSFLLPSGNNGFLVEGTDGRPGLQMLSRRVSCKRKAVEGNNGQSSDVGSSSYSQYTDGSAWHTIPTQDNAGSSSSRSISTEPVNARLGLGMRNEASENVPDSNIAGSSESFHRNSRLRLNPSNPQNASHPTAFSTGSMIRHSGVSSSSQVSQRFHRVDNSLNLRSAPPIDNVVSQSQPLVIHVPALPRNRQSIRWSGGSSSRNIHSSNSMICADREQEDASSRRMSRNILEHPVFVPATDLRNLVQNPTVRASSSSSESSSIPGNVASSSRTGSNPATNPSSAPTWVSRPNPAQHPWRLSEYVRRSLFSPGSDAIGSPSNNYSSLQSGLSTSEPRALSFGSGANPRSSSWLERQGDSEFGIPYSLRTLAVASEGSSRLVSELRNVLGLMRRGGNVRFEELLALEERIGNVSTGLSEEIVLKLLKQRKHSVEKGSQADAEPCCVCQENYGDGDDVGKLDCGHDFHSSCIKEWLMQKNLCPICKTAGLTA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2463 669 MobiDBLite consensus disorder prediction 373 396 - -
Aed7g2463 669 MobiDBLite consensus disorder prediction 494 532 - -
Aed7g2463 669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 575 668 IPR045191 GO:0061630
Aed7g2463 669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 566 IPR045191 GO:0061630
Aed7g2463 669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 575 668 - -
Aed7g2463 669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 566 - -
Aed7g2463 669 MobiDBLite consensus disorder prediction 373 404 - -
Aed7g2463 669 MobiDBLite consensus disorder prediction 277 334 - -
Aed7g2463 669 ProSiteProfiles Zinc finger RING-type profile. 622 663 IPR001841 -
Aed7g2463 669 MobiDBLite consensus disorder prediction 429 470 - -
Aed7g2463 669 CDD RING-H2_TTC3 621 663 - -
Aed7g2463 669 MobiDBLite consensus disorder prediction 218 260 - -
Aed7g2463 669 MobiDBLite consensus disorder prediction 144 164 - -
Aed7g2463 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 666 IPR013083 -
Aed7g2463 669 MobiDBLite consensus disorder prediction 215 260 - -
Aed7g2463 669 SUPERFAMILY RING/U-box 610 665 - -
Aed7g2463 669 MobiDBLite consensus disorder prediction 429 473 - -
Aed7g2463 669 Pfam Ring finger domain 622 663 IPR001841 -
Aed7g2463 669 MobiDBLite consensus disorder prediction 273 334 - -
Aed7g2463 669 SMART ring_2 622 662 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2463 Aed-Chr7 26389012 26395420 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2463 212 667 C3H Transcription Factor Family AT2G15530 33.084 2.70e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2463 - - gmx:100783014 1116.29