LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g2461	ATGCAAGGGCAGAGAGGTATGGTTGGTTCAATGCCTGATACCTTAGAATTTGACTGTGGATCTACCTCAGGTAATTCTACTGCTGATCAGCCAATTTGCTGGAATAATGTGAATCCTGCAGAACATCAAATTCCTGATTATATACTTTTTCATGCTGATATGAACTCATCTTATGGGAATTCTATTGTTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGACCCAAGTTCCAGTAATACACCAAATGAGATTAACAATAATGAACAAAAAAAAGAACTTGGAGGCTCATCAACCATTACTGCTGGTGCATTGGCTGGTCCAAGACTAGAAGAAAGTCGCCTTCAACAAACCAATGCTCTTTCACTAGACAATGTCAATACAGGTCTTATGTACACACATAGCCCCAATTCTCGTTTGATGCCCCAGAATCTCAACTTGAATGCAGCTTTAGCGGACAGTGGCAGTGATAATAGTCAACATCAGGAGCTCCCTAACTTAAACAAGTCTAGTGGGTTGGCAAATGAGTGTATACCACCTAATGTTGGATCTGGTTCTTTTCTGCTTCCTTCAGGAAATAATGCCTTCCTGGTAGGAGATACTGATGGTAGGCCAGGTTGTTCTCTTGATACTCGACGGGTCTCTTGTAAAAGAAAGACTGTTGAAGGAAATAATGGACCATCTTCAGATGCAGGTAGTTCTAGCTACAGTCAGTGTACAGATGGCAGTGCTTGGTACTCAATTCCTACTCAGGATAATGCTGGAAGCAGTTCTATTTTCTCAGAACAGGTAAACGCAAGACTTGGCCTGGGTATGGGGGATGAAGCATCTGAAAATGTTCCTGATTCAAACATTGCAAGAAGCTCGGAAAGCTTTCCCAGGAATTTCCATTTGAGGTTAAATCCTTCAAACCCACAGAATTCGGCTCCTCCCACTGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGCGTTTCTTCGTCTTCTCAAGTATCACAAAGGTTTCATTCTGTTGATAATTCTCTGAACTTGAGGTCAGCACCACCGATAGATAATGCGGTTGCTCAAAGCCAGCCACCTGTAATCCATGATGCTGCTTTGCCTAGGAATAGACAATCAATTAGATGGAGTGGTGGTTCTAGCTCCAGCAACATCCACTCATCAAACTCAATTATAAGGGCAGACAGGGATCAGGAGGATGCGAGATCAAGAAGAATGTCTAGAAATATTTTCGAACATCCAGTCTTTGTACCTGCAACTGATTTAAGAAATTTAGTTCAAAATCCAACAGGAAATGTTGCTTCTTCGTCATGGACTGGATCAAATCCAGCTACCAATCCCTCATCTGCCCCAACTTGGGTTTCATGTCCTAATCCTCCACAGCATCCACGGAGGTTATCTGAATATGTCCGCCGATCCTTGTTTTCTCCTGGTTCAGATGCTATTGGAAATCCAAGCAATAATTATTCTTCCTTGCGCTCTGGTCTTTCTGCATCTGATCCAAGGGCTTTAACGTCTGGGAATGGGGCAAACCCGAGATCATCTTCATGGTTGGAGAGGCAAGGAGATAGTGAATTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAGTGTTTTGGGCCTTATGCGTAGAGGAGGGAATGTACGATTTGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCGTATTGAAACACTTGAAACAGAGAAAGCACTCGGTTGAGAAAGGGTCTGAGGCTGATGCAGAACCCTGTTGTGTTTGTCAGGAGAATTATGGTGATGGGGATGATGTTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATCAAAGAGTGGCTAATGCAAAAGAATCTGTGTCCCATTTGTAAGACAGCGGGCTTGACAACGTGA	1974	0.4336	MQGQRGMVGSMPDTLEFDCGSTSGNSTADQPICWNNVNPAEHQIPDYILFHADMNSSYGNSIVNHEWQNLSGWSLGDPSSSNTPNEINNNEQKKELGGSSTITAGALAGPRLEESRLQQTNALSLDNVNTGLMYTHSPNSRLMPQNLNLNAALADSGSDNSQHQELPNLNKSSGLANECIPPNVGSGSFLLPSGNNAFLVGDTDGRPGCSLDTRRVSCKRKTVEGNNGPSSDAGSSSYSQCTDGSAWYSIPTQDNAGSSSIFSEQVNARLGLGMGDEASENVPDSNIARSSESFPRNFHLRLNPSNPQNSAPPTAFSTGSMIRHSGVSSSSQVSQRFHSVDNSLNLRSAPPIDNAVAQSQPPVIHDAALPRNRQSIRWSGGSSSSNIHSSNSIIRADRDQEDARSRRMSRNIFEHPVFVPATDLRNLVQNPTGNVASSSWTGSNPATNPSSAPTWVSCPNPPQHPRRLSEYVRRSLFSPGSDAIGNPSNNYSSLRSGLSASDPRALTSGNGANPRSSSWLERQGDSEFGIPYSLRTLAVASEGSSRLVSELRSVLGLMRRGGNVRFEELLALEERIGNVSTGLSEETVLKHLKQRKHSVEKGSEADAEPCCVCQENYGDGDDVGTLDCGHDFHSSCIKEWLMQKNLCPICKTAGLTT	657

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g2461	657	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	1	554	IPR045191	GO:0061630
	Aed7g2461	657	SMART	ring_2	610	650	IPR001841	-
	Aed7g2461	657	MobiDBLite	consensus disorder prediction	429	454	-	-
	Aed7g2461	657	MobiDBLite	consensus disorder prediction	302	336	-	-
	Aed7g2461	657	ProSiteProfiles	Zinc finger RING-type profile.	610	651	IPR001841	-
	Aed7g2461	657	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1	1	554	-	-
	Aed7g2461	657	MobiDBLite	consensus disorder prediction	377	393	-	-
	Aed7g2461	657	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	563	656	IPR045191	GO:0061630
	Aed7g2461	657	SUPERFAMILY	RING/U-box	598	653	-	-
	Aed7g2461	657	MobiDBLite	consensus disorder prediction	377	406	-	-
	Aed7g2461	657	MobiDBLite	consensus disorder prediction	481	522	-	-
	Aed7g2461	657	MobiDBLite	consensus disorder prediction	152	174	-	-
	Aed7g2461	657	CDD	RING-H2_TTC3	609	651	-	-
	Aed7g2461	657	MobiDBLite	consensus disorder prediction	429	466	-	-
	Aed7g2461	657	MobiDBLite	consensus disorder prediction	479	522	-	-
	Aed7g2461	657	Pfam	Ring finger domain	610	651	IPR001841	-
	Aed7g2461	657	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	574	654	IPR013083	-
	Aed7g2461	657	MobiDBLite	consensus disorder prediction	75	97	-	-
	Aed7g2461	657	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1	563	656	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g2461	Aed-Chr7	26375046	26380670	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g2461	1	657	C3H Transcription Factor Family	AT2G15530	28.269	3.10e-49	181

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g2461	-		-	gmx:100783014	1068.91