Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2459 ATGGACATGGTGGAGATGATGTTGCAGCACCTCCATGATTTCTCTGAACCATACGCTCATGATCAAGGATTTCATTTTCACCCCCCAGAAGACCACTTCTATGCTAACAACAACAACAACATACGCAACACTATGCCACTGGCAGATTTAATTGACAATAATAACCCTCCCACTTCCATGCCTTGCTGGTCTTCATCCACAATCTCTTTCTCCAATAATAACAACCCTACAGTGCTTCAACAACAACCAACCACAACCTGCGAGGGTGACAATAAGAAGAATTCGATGGCGGTGATGAGGGAGATGATATTCAGAATCGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTTAAGGCGCCGAAGCGAAGGAACGTGAAGATATCGAAGGATCCACAGAGCGTGGCGGCGCGGCACCGCAGAGAGAGGATAAGCGAGAGGATAAGGATACTGCAGAGGCTGGTCCCCGGAGGAACTAAGATGGACACTGCGTCCATGTTGGATGAGGCCATTCACTACGTCAAGTTCCTCAAAACGCAGGTTCAGTCACTCGAACAACGCGCTTCCTCCGCAACCCAGATAGAGATAGGCTTCCCTGTTAGGAGTGCTCCCACCCCTTATTTTCCTCACATGGAGATGCATCATAGATATGATTAA 660 0.4894 MDMVEMMLQHLHDFSEPYAHDQGFHFHPPEDHFYANNNNNIRNTMPLADLIDNNNPPTSMPCWSSSTISFSNNNNPTVLQQQPTTTCEGDNKKNSMAVMREMIFRIAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLEQRASSATQIEIGFPVRSAPTPYFPHMEMHHRYD 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2459 219 Gene3D - 128 197 IPR036638 GO:0046983
Aed7g2459 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 189 IPR036638 GO:0046983
Aed7g2459 219 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 213 IPR045843 GO:0003700|GO:0006355
Aed7g2459 219 Coils Coil 168 195 - -
Aed7g2459 219 Pfam Helix-loop-helix DNA-binding domain 138 178 IPR011598 GO:0046983
Aed7g2459 219 SMART finulus 135 184 IPR011598 GO:0046983
Aed7g2459 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Aed7g2459 219 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2459 Aed-Chr7 26352043 26352702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2459 96 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 91.489 6.89e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed7g2459 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2459 - - gmx:100788158 262.692