Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2443 ATGGTGGCAGCATTAGCATACGAGGAGAGTCGTCGGAAGAGATTGGAGGAGAACAGAAAGAGGATGGAAGCCCTCAATCTGCCCCTCCTCTCTCAAGCTCTTCACAAATCCCCTTCTCCCAAACCCTCACCGTTGAAGCAGGTCAAAAACCGCACCATCGAGAAAGAGGTGGTTGTAGTCAGAAGGTCAAGCCGTGTTGCAAACATGCCCTCTCCCGTCTATAAAGAAGTAGTTATTGATCGCGTGACACTACCCAGAAGAACTCCTAGTAGACCTTACAATAGGCACAGGGATTATGCGAATAGGGGCCTTCCAGTCCATTTCTGCAAGAGCCATCTTCCAAAAGGGGATGAAGTGATGGCTTTGATTGATGAGGATGGGAATGAGCATCCAACAATATATTTGGCACGAAAAACAGGACTTAGTGGTGGATGGAAAGGTTTTGCTGTTGCTCATGACCTAGCCGATGGAGACGCTGTCATTTTTCAATTAGTCAAGCGCACTGCATTCAAGGTGATTAAATATTTTGATCATATTAGCTCATTCATGCCCTTGTGTACATTCTTAGAGCAAATTATCCTCCAGAGAATAAGCAGCTTGAGTGAATTGCGGTTGGATGTTGGAGCCAGTAAAATTAATCTAGGTATGTGGTGGAACTTGGAAGCGGAAGAAGTTCCTTCTTGGGTTCAGTTTTTTGGGAAGACTTGTATGTAA 714 0.451 MVAALAYEESRRKRLEENRKRMEALNLPLLSQALHKSPSPKPSPLKQVKNRTIEKEVVVVRRSSRVANMPSPVYKEVVIDRVTLPRRTPSRPYNRHRDYANRGLPVHFCKSHLPKGDEVMALIDEDGNEHPTIYLARKTGLSGGWKGFAVAHDLADGDAVIFQLVKRTAFKVIKYFDHISSFMPLCTFLEQIILQRISSLSELRLDVGASKINLGMWWNLEAEEVPSWVQFFGKTCM 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2443 237 Gene3D - 41 177 IPR015300 -
Aed7g2443 237 SUPERFAMILY DNA-binding pseudobarrel domain 100 174 IPR015300 -
Aed7g2443 237 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 103 172 IPR044837 -
Aed7g2443 237 Coils Coil 5 25 - -
Aed7g2443 237 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 101 IPR044837 -
Aed7g2443 237 PANTHER B3 DOMAIN-CONTAINING PROTEIN 103 172 - -
Aed7g2443 237 PANTHER B3 DOMAIN-CONTAINING PROTEIN 2 101 - -
Aed7g2443 237 ProSiteProfiles B3 DNA-binding domain profile. 104 178 IPR003340 GO:0003677
Aed7g2443 237 CDD B3_DNA 88 172 IPR003340 GO:0003677
Aed7g2443 237 SMART B3_2 86 179 IPR003340 GO:0003677
Aed7g2443 237 Pfam B3 DNA binding domain 101 173 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2443 Aed-Chr7 26251500 26254195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2443 3 172 B3 DNA Binding Superfamily AT3G19184 39.720 4.62e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed7g2443 B3 4.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2443 - - gmx:100797091 276.174