Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2424 ATGGACTTTGTCTCGCCACAGCTACATTCTGATTCCGAAACTCACCCCTTGTTCATGGCGCGCCCTACCACTTCTCACCATGTCATTGACATCACGGGGAGCAGTTCCGAACCTTCCACTTCTTCTTCCATGCCCCATGATAGCCTTTCCAACGAAGTCGATTTTGCTGCTTTGAATTCCAGGAGTAGAAGGCGAGGGGACACTACTACACGTAGTAGGCAGCATAGGAGTCCTTTGAATTCTGGTTTGTGGATATCTGTTGAGTTAGTCATCACCGTTAGCCAGATTGTTGCGTCGGTTGTTGTTCTGTCTCTGTCGAGGCACGAGCATCCGCACACCCCGTTGTTTGCATGGATTGTTGGGTATGCCTCCGGGTGTGTTGCTACCCTCCCTCTGTTATATTGGCGGTATTATCATAATTGTCGTGTTCGGGAGCAGGAGTTGTCTCAGGCCTCTCCGAGGAGGAATGATCCTTCGGGGACACTTCTTTCCAATTCCACGACGAATGGGGGGGAAGATGTGAGGGCTTCTTCTAGAAGCAATCAAGAGTCGTGGTTGATGAATGCAAGATTGAAGGTACTTGTGGAATACTTCAAAATCGCTGTAGATTGCTTTTTTGCTATATGGTTATGTGTAGTATTTCTTACTTTTAGCTGTATCGGTTATGCTATGCCCTTCATTCTATGTGCAACAATTTGTTGCTGCCTGCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATATGGCACAAACCCGAGGTGCATCCTCTGAATCGATTGATGCTCTGCCGACTTATAAGTTCAAAATGAAGAAAAATAAAATCAAAGGTGAAAGCAACTCAGCTGTTAGTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAACGTGTGATCTCTGGAGAAGATGCAGTTTGTTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCACCTATTTCACAAAGACTGTGTCGACAAGTGGTTGAAGATAAATGCATCATGCCCCCTTTGCAAGAATGAGGTTAGTGAGAACCGCAGCCTCATCAGGTTCAGGTATCGCCTCTCTCTTATTCCTTCTACTTGTAAGATTGCTGCTAATTTGGAAATATTGCTTGCGTTTCGTTTGGTAGTTGAAGAGTTGAGAAACACTTGTAATGCTTTTGAACTCTTGTTGATGGCTCACCCTACTCCTACTCACAATATTGTCATTGACATCACTGGGAGTTCTCGTGCCAATGCCAATGATGTAGATGCTTTGAATTCTAGGATCAATAATAATAATAATAGACGTAGGTTGTTGAATACGAGGTTATGGATATGTGTTGAGCTAGTGTTCACACTGAGCGTGATTGTTGCCTCTGTTGTTGTTCTGTCTTTGTCGTCAAAGTATGAGCATGAGCATCCGCCGCGTGGATGA 1443 0.4477 MDFVSPQLHSDSETHPLFMARPTTSHHVIDITGSSSEPSTSSSMPHDSLSNEVDFAALNSRSRRRGDTTTRSRQHRSPLNSGLWISVELVITVSQIVASVVVLSLSRHEHPHTPLFAWIVGYASGCVATLPLLYWRYYHNCRVREQELSQASPRRNDPSGTLLSNSTTNGGEDVRASSRSNQESWLMNARLKVLVEYFKIAVDCFFAIWLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDMAQTRGASSESIDALPTYKFKMKKNKIKGESNSAVSEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINASCPLCKNEVSENRSLIRFRYRLSLIPSTCKIAANLEILLAFRLVVEELRNTCNAFELLLMAHPTPTHNIVIDITGSSRANANDVDALNSRINNNNNRRRLLNTRLWICVELVFTLSVIVASVVVLSLSSKYEHEHPPRG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2424 480 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 426 477 - -
Aed7g2424 480 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 210 353 - -
Aed7g2424 480 SMART ring_2 306 346 IPR001841 -
Aed7g2424 480 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 57 212 - -
Aed7g2424 480 SMART ringv_2 305 347 IPR011016 GO:0008270
Aed7g2424 480 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 426 477 - -
Aed7g2424 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 358 IPR013083 -
Aed7g2424 480 SUPERFAMILY RING/U-box 298 355 - -
Aed7g2424 480 Pfam Ring finger domain 306 347 IPR001841 -
Aed7g2424 480 CDD RING-H2_RNF111_like 305 347 - -
Aed7g2424 480 MobiDBLite consensus disorder prediction 57 77 - -
Aed7g2424 480 MobiDBLite consensus disorder prediction 152 177 - -
Aed7g2424 480 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Aed7g2424 480 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 210 353 - -
Aed7g2424 480 MobiDBLite consensus disorder prediction 149 177 - -
Aed7g2424 480 MobiDBLite consensus disorder prediction 30 49 - -
Aed7g2424 480 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 57 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2424 Aed-Chr7 26125185 26130752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2424 62 355 C3H Transcription Factor Family AT1G80400 52.923 8.47e-118 350