Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2315 ATGTCCATGCCTGGTAACAACACCAACCAACCACTGATAAATTTTGAGCAAAAGGTGGTATACAAAGAATGTACGCACAACCTTACAATATCACTTGGCAAAGTTACTCATGATGGTTGTTCTGAGTATCTCGGAGGATGTGTTGGCCTCAACAACAAGGACACTCTCCTATGTGCTTGTTGCGGTTGTCACCGTAGCTTTCACCGCAAGCACATTGTTTTGAACGATGTACCTGTAACACAAGCAGAGAATGGACAGGAGGTGAGGCCGAAAAGGAAGAAGAGGACAACGTTCTCGCCAGAGCAGAGGAGTCGATTGATTATGTTTGCTGACAGTATGGGGTGGAAACCTCGAAAGGATAATAAGGACGAAATCCAACAAATTTGCTCTGAGATGGGAATGAGCCGTAGGATGTTTCTGGTGTGGCTCAGCAACAACCGTCACCGAGCAATGCAGGTTGTCAAAGCACCAGATAATTGA 480 0.4562 MSMPGNNTNQPLINFEQKVVYKECTHNLTISLGKVTHDGCSEYLGGCVGLNNKDTLLCACCGCHRSFHRKHIVLNDVPVTQAENGQEVRPKRKKRTTFSPEQRSRLIMFADSMGWKPRKDNKDEIQQICSEMGMSRRMFLVWLSNNRHRAMQVVKAPDN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2315 159 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 151 - -
Aed7g2315 159 Pfam ZF-HD protein dimerisation region 19 72 IPR006456 -
Aed7g2315 159 CDD homeodomain 92 149 IPR001356 GO:0003677
Aed7g2315 159 ProSiteProfiles 'Homeobox' domain profile. 89 153 IPR001356 GO:0003677
Aed7g2315 159 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 17 151 - -
Aed7g2315 159 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
Aed7g2315 159 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 71 IPR006456 -
Aed7g2315 159 SUPERFAMILY Homeodomain-like 83 150 IPR009057 -
Aed7g2315 159 Gene3D - 79 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2315 Aed-Chr7 25337551 25338030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2315 13 151 ZF-HD Transcription Factor Family AT1G69600 25.258 2.41e-20 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aed7g2315 ZF-HD_dimer 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2315 - - gmx:102668663 190.66