Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2307 ATGCTTGGTTGCGGTAGCATTCGCTTTTTCTCTTCGCAATCACTACTACTTCTTCTTCTTCTTCTTCTCCTTCTAGGGTTTTGTCTTGTATCGCTTCTCAACACTGCATCTCTCGAAATTAATCCAAGTGAAGCCAATTCGGCCCAGGGTCCCAAACTCAATTGGTTGCAGCATGCTAATGCTCATGAGAATTTCTCCTCCCAAGCCAAATTTTTGAGCTCCAATTTTCTGCTTTCTTTCCCACCTAAGAATCCACGCCACGAAGAACCAAACCCTGGGACTGCCGGGTATGCCTTTTACTTCAACAATCACCCAATTTTAGTCTCTGTTGTATTGCTACAAACTTTCAACTTGTTCTCTAATGCATTCATTCTTGCAGACTTCTATAATTTTGCAATGACTTCTGTTGAAACTAAGGTTATTCCTCAGCTTCATGAAGATAGGAGAACAACTTCCTTCCATGGAGGCTATGAGAATGACAACCATAGATGTCCTGATGTCACTGCAACTCCAATTGTTAACAATCATAGATCTCGGGCTTTGGATGGTTTGGTGAACAATCATACTAATTACACAGGCCAAAACAACAAGTCTTCCAACTGCATGGCTGTAGATATTGATGATGATGACATACTTGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCAACTTGCACTCCCAAACCATCAATATCCAAGCTTCCTCCTATAACACCAACTGCAGATAAAGATAATTTTGCTAGACAGGGGGATAATGTTTTGCCACCAGAGCTGTGTTTAGATTGCATCCATGGTTACAAGTTAGGGTTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAATTGAAGGATAATCTAATTGCAATCTCTAATGAGCTGCTAGACAATGGTGAAAACCTCAATTCTACAGAGATAGAAAAGCTTCGCCATGATAGGTCGCAGCTGAATAAGCAAATCCAGCAGCTTGAAAAATATATTCATCCTGGTAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTCTGCTTCCACGGCACCACCTACATCTTTTGTGTATGAAACACCTCAGCAAACTGTCCACTGTAGTGGATCTAAGGGATATGATACCCAGGCTTATATGGATAATGGGACAGAGGCATATGGGTCATCGTTCCAGTCTCTTCCATCTTTTTCTGTAGATAATTATAGTATGTCATTAGGTTTGGTGGGGAGGGAAACATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCTATGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCATTCATTTCGCCCCAATCAAAGAGAGATCATTAATGCCTCAATGAGTGGATGTGATGTTTTTGTTCTAATGCCTACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCAGCTCTTATTCGTCCCGGTATAACATTAGTAATTTCCCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTATTGCAGGCAAATATACCGGCTGCTTACTTGAGTGCCAACATGGAATGGACTGAACAGCAGGAGATCTTCCGAGAACTTAATTCTGATTATTGTAAATACAAGTTATTATATGTGACACCTGAAAAGGTTGCCAAAAGTGATAATCTTCTGCGACACCTGGACAGTTTACATAATCGCAAATTGCTTGCAAGGATTGTAATTGATGAGGCCCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCGAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTTGTTAACTGTATCATTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGTTATTCTGTTATCCCCAAGACCAAAAAGTGTTTGGAGGAAATTGACAAATTCATTAGGGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTGTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGAGCCTTGGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATCATTTGTGCTACTGTGGCATTTGGAATGGGTATAAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTATATTATATTATAGCTATAGTGATTATATACGAGTTAAGCATATGATAAGTCAAGGAGCCATAGAGCAAAGTCCCATGACATCTGGATACAACCGTTTGAATATGATAAGTTCAGGAAGGATACTAGAAACAAACACTGAAAACCTTGTGCGAATGGTCAGTTATTGTGAAAATGGTGTTGATTGTCGGCGTTTTCTGCAGCTTGTTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCAGAAAACATGTGATAATTGCTTGAAGATCACAAGTTTCATTGAGAAGGATGTCACAGAGATGGCAAAGCAATTGGTTGAACTTGTTAAGCTAATGGGACAGAGGTTCTCATCATCTCATATATTAGAAGTGTATCGTGGTTCCTTAAGCCAAATGGTCAAGAAACACCGGCATGAGACTGTGAGTCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTCGAGGATTTTCTTGTGGAGGAAGTAAAGAAAAGCGATTTTTATGGATCAGTATCATCAATATTGAAGGTAAATGAGCCCAAGGTTCGCAATCTGTTTGCTGGACAGAGAATTATATTGAGATTCCCATCTTCTGTAAAGACATCAAAACCAGGAAAATTTGATGCAACCCCAGCTAAGGGTCCTCTGACATCTGGAAAGCTGAATGTTACGCAAATAGACACTCCTGTGCCTCAAACTGAAGTGGATTTGAATCTTTCAGCTAAGTTATACAATGCCCTGCGGATCTTGAGGACACGTCTTGTTGGAGAAGCTGGAGATGGTGTCATGGCTTACCACATATTCGGTAATGCAACGTTGCAGCAGATAAGCAAGAAAGTGCCGAGAACAAAAGAAGAACTCCTTGATATCAATGGCATTGGCAAGGCTAAGGTAAGCAAGTATGGGGATCAGATACTGGAAACCATTGAAAATACGATAAATGAACATCACAACTTGGACAAAGTGAGTAGCGGCAGCAAAGGAAGTGCAGATTCTTCCAAAAAGAGACGAGTGTCAAATGGAAATGCAGATGCAAATGCTGAGGATGATGATGCCCTCACCAAAAGTACTGGTCGTTCAAAGAAAAGGACGGTAAAGAGACAAAATAGAAAAGCTGTGATATATGATTCTCCAGAGGAAGATTATTTTCATGGATGCCCTGATGAAGACCTAGATTTTGACATCATAGAAATTGATGCATTAGATCAAGTGACTTGTAAAAATGCTGCAGGAAGAGTACTACCTCAATGGACAGCATCTTGA 3603 0.4016 MLGCGSIRFFSSQSLLLLLLLLLLLGFCLVSLLNTASLEINPSEANSAQGPKLNWLQHANAHENFSSQAKFLSSNFLLSFPPKNPRHEEPNPGTAGYAFYFNNHPILVSVVLLQTFNLFSNAFILADFYNFAMTSVETKVIPQLHEDRRTTSFHGGYENDNHRCPDVTATPIVNNHRSRALDGLVNNHTNYTGQNNKSSNCMAVDIDDDDILENIDVDQIVEKYQSTCTPKPSISKLPPITPTADKDNFARQGDNVLPPELCLDCIHGYKLGFCPEAASHLQELKDNLIAISNELLDNGENLNSTEIEKLRHDRSQLNKQIQQLEKYIHPGNLNEERQKSHFSASTAPPTSFVYETPQQTVHCSGSKGYDTQAYMDNGTEAYGSSFQSLPSFSVDNYSMSLGLVGRETFIPKIIEVNYIEGSGDKRWSSYDFPWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIRPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEIFRELNSDYCKYKLLYVTPEKVAKSDNLLRHLDSLHNRKLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLCYSVIPKTKKCLEEIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRALVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYSYSDYIRVKHMISQGAIEQSPMTSGYNRLNMISSGRILETNTENLVRMVSYCENGVDCRRFLQLVHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEMAKQLVELVKLMGQRFSSSHILEVYRGSLSQMVKKHRHETVSLHGAGKHLAKGEASRILHHLVVEDFLVEEVKKSDFYGSVSSILKVNEPKVRNLFAGQRIILRFPSSVKTSKPGKFDATPAKGPLTSGKLNVTQIDTPVPQTEVDLNLSAKLYNALRILRTRLVGEAGDGVMAYHIFGNATLQQISKKVPRTKEELLDINGIGKAKVSKYGDQILETIENTINEHHNLDKVSSGSKGSADSSKKRRVSNGNADANAEDDDALTKSTGRSKKRTVKRQNRKAVIYDSPEEDYFHGCPDEDLDFDIIEIDALDQVTCKNAAGRVLPQWTAS 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2307 1200 Pfam DEAD/DEAH box helicase 453 621 IPR011545 GO:0003676|GO:0005524
Aed7g2307 1200 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 659 804 IPR001650 -
Aed7g2307 1200 MobiDBLite consensus disorder prediction 1110 1138 - -
Aed7g2307 1200 Gene3D HRDC domain 1013 1101 IPR044876 -
Aed7g2307 1200 CDD DEXHc_RecQ 442 641 - -
Aed7g2307 1200 SMART RQC_2 867 977 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aed7g2307 1200 Gene3D - 865 974 IPR036388 -
Aed7g2307 1200 MobiDBLite consensus disorder prediction 1097 1151 - -
Aed7g2307 1200 SUPERFAMILY HRDC-like 1020 1094 IPR010997 GO:0000166|GO:0044237
Aed7g2307 1200 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 443 918 IPR004589 GO:0004386|GO:0006310
Aed7g2307 1200 Gene3D - 415 641 IPR027417 -
Aed7g2307 1200 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 459 634 IPR014001 -
Aed7g2307 1200 ProSiteProfiles HRDC domain profile. 1017 1099 IPR002121 GO:0003676
Aed7g2307 1200 Pfam RecQ zinc-binding 776 858 IPR032284 -
Aed7g2307 1200 PANTHER DNA HELICASE RECQ FAMILY MEMBER 139 1167 - -
Aed7g2307 1200 Pfam RQC domain 864 978 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aed7g2307 1200 SMART helicmild6 684 765 IPR001650 -
Aed7g2307 1200 Coils Coil 307 327 - -
Aed7g2307 1200 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 573 582 IPR002464 -
Aed7g2307 1200 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 139 1167 - -
Aed7g2307 1200 ProSiteProfiles Rhodanese domain profile. 644 715 IPR001763 -
Aed7g2307 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 783 IPR027417 -
Aed7g2307 1200 CDD SF2_C_RecQ 642 774 - -
Aed7g2307 1200 Pfam HRDC domain 1021 1089 IPR002121 GO:0003676
Aed7g2307 1200 Pfam Helicase conserved C-terminal domain 658 764 IPR001650 -
Aed7g2307 1200 SMART hrdc7 1017 1099 IPR002121 GO:0003676
Aed7g2307 1200 SMART ultradead3 447 650 IPR014001 -
Aed7g2307 1200 Gene3D - 642 861 IPR027417 -
Aed7g2307 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 908 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2307 Aed-Chr7 25283602 25291595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2307 673 796 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 9.36e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2307 K10901 - gmx:100800006 1986.46