Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2202 ATGGTTTTATCTTGGACTAGAAGAAACGTTTTCCGCCGCGTCAAGAAGGAGAAGGAACAAACTCAATTATTAGAAGTGGAGGTTGCGATTCCCAACCACTTCCGCTGCCCGGTGAGTTTGGAGCTGATGACAGACCCGGTGACTCTATCAACCGGCATCACCTACGACAGGGTCAGCATCGAGAAGTGGATCGAGGGAGGGAACAAGACCTGCCCCGTCACCAACCAGCTCCTCACAACCTTCGACATCATCCCCAACCACGTCATTCGTAGGATGATCCAGGATTGGTGCGTCCAAAACAGTTCCTACGGGATCCAGAGGATCCCCACTCCTCGTATCCCCGTCTCGAGTTACGAGGTTTCCGACGTGTGTACGAGGATCTTTTCAGCCTGCCAGCGCGGGGATGCCAAGAGGTGTCAGGAGCTGGTCGGAAAGATTAAGGTTTGGGGTAGAGAGAGCGAGAGGAACAAGAGGTGCATACTTCGTGCTGGTGCTGCTGATCTTGCATACGCCTTTGATTGTTTCTCAAGTCACTCTATTGATAAGCATGTCGTGCTTTTGGAGGAGATTTTGGAAATCATGACATGGATGATCCCACTTGAGGATGAGGGTGTTTCTAAATTGAGTTCAAGAACTTCTTTGAATTCATTGATTTGGTTTCTAGAGGGGAAAGACCTCGCATCGAGGCAAAGTGCTGCTTTGTTGCTCAAGGAAGTGCGTGTTCAAGAATTGGCCAAAGTTGGAGAAGTTGTTGATGCTTTGGTTAGGATGGTTAAGGAGCCTATTAGGAGTAGTGCTTCCACCAAGGCTTGTTTGGCAACGATTTTTAACTTGGTGTCTTCTGCTGAGAATAGAGGGGAAATTGCTCAAAGATTTGTGGAGTTGGGTTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAAGAGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATTGCCAAAAGGGGAAGGAGGCTATTCAAACCAATGCTCTAGCCTTGCCTCTTGTTATTAAGAAGCTTTTGAGGGTGTCACCATTGGCTTCAAGTTTTGCTGTTTCTATTATTAGGAAGATTGCTGACAAGAGGGACGAAGGGGTTCTGATTGAGGCACTTCAAGTTGGGATTTTTCAGAAGCTCTTGGTTATGCTGCAGGTTGGGTGTGATGAGAGCACCAAGGAGAATGCTACTGGCTTGTTGAAATTGTTGAATGGTTACAGGAACAAAGCGGAGTGCACTGACTCGTCATCGGATTTCAAGCATCTTAAGAAGTCATTCTGA 1299 0.4711 MVLSWTRRNVFRRVKKEKEQTQLLEVEVAIPNHFRCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNKTCPVTNQLLTTFDIIPNHVIRRMIQDWCVQNSSYGIQRIPTPRIPVSSYEVSDVCTRIFSACQRGDAKRCQELVGKIKVWGRESERNKRCILRAGAADLAYAFDCFSSHSIDKHVVLLEEILEIMTWMIPLEDEGVSKLSSRTSLNSLIWFLEGKDLASRQSAALLLKEVRVQELAKVGEVVDALVRMVKEPIRSSASTKACLATIFNLVSSAENRGEIAQRFVELGLVSLLLEAIVDGEKRVCEKALGVLDCICDCQKGKEAIQTNALALPLVIKKLLRVSPLASSFAVSIIRKIADKRDEGVLIEALQVGIFQKLLVMLQVGCDESTKENATGLLKLLNGYRNKAECTDSSSDFKHLKKSF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2202 432 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842|GO:0016567
Aed7g2202 432 SUPERFAMILY ARM repeat 181 409 IPR016024 -
Aed7g2202 432 PANTHER WDSAM1 PROTEIN 16 432 IPR045185 GO:0061630
Aed7g2202 432 Pfam U-box domain 30 101 IPR003613 GO:0004842|GO:0016567
Aed7g2202 432 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 16 432 - -
Aed7g2202 432 Gene3D - 205 419 IPR011989 -
Aed7g2202 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 107 IPR013083 -
Aed7g2202 432 SUPERFAMILY RING/U-box 23 106 - -
Aed7g2202 432 SMART Ubox_2 33 96 IPR003613 GO:0004842|GO:0016567
Aed7g2202 432 CDD RING-Ubox_PUB 34 76 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2202 Aed-Chr7 24583439 24584737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2202 10 432 U-box Gene Family AT5G37490 44.647 5.44e-122 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2202 - - gmx:100800966 748.429