Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2188 ATGGGAAGACAACCTTGTTGTGACAAAGTGGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTCATGAATTTCATCTTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGGGTTGTTAAGGTGTGGAAAAAGTTGCAGGCTCAGGTGGACAAATTACCTTAGGCCAGACCTGAAGAGAGGCCTTCTATCAGAATATGAAGAGAAATTGGTCATTGATCTCCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTCATCTCCCAGGAAGAACTGATAATGAGATCAAGAATCACTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTAGCCACAAATCACTTTACAGTACAACTGAGCAAACTCAAGCCCAAGCAGATGAACAACCATTGCAAGAACAACATGAGCAACAAGAACCAAAATTTGAAACTGAAAAAGAGCAAAACAAGGAGGCAAAGACTTCAATTGAATCATCAACCACTGAAGAAGCTAAGGAGGTAGACCAAATTATGACACCACTATTTGAGTCATGGGATCTAATGAATGAGTTCTGCACTGATGAAGTTCCCATGATAGAACCAAATGAGATCCTACTTCCTTCTGCGCCTTCCACTACTACTACATCATCATCACCATCTTCAGCATCAACATCAACATCAATATGTTCTTATTCAAATTCACCCAACTTCCTTGAAGACCTTCTGCTCTCAGATTTTGATTACAATGATACCAATTTTGACAATGACAATAGCAGCATGGCCTTTTGGGATGATGACTTTATTAGAACTTGGAATTTGCCTATTAATGATGATGGTGATGGTGACACAAAGCAAGTGTTTGACGCTCCCTTCAATCAGTACCCGAGAGTGATCACGGATTCAGATTCTTGGGTGAATGGGTTGCTTTGA 951 0.4101 MGRQPCCDKVGLKKGPWTAEEDKKLMNFIFTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKLVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVSHKSLYSTTEQTQAQADEQPLQEQHEQQEPKFETEKEQNKEAKTSIESSTTEEAKEVDQIMTPLFESWDLMNEFCTDEVPMIEPNEILLPSAPSTTTTSSSPSSASTSTSICSYSNSPNFLEDLLLSDFDYNDTNFDNDNSSMAFWDDDFIRTWNLPINDDGDGDTKQVFDAPFNQYPRVITDSDSWVNGLL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2188 316 Gene3D - 71 116 - -
Aed7g2188 316 MobiDBLite consensus disorder prediction 131 181 - -
Aed7g2188 316 MobiDBLite consensus disorder prediction 146 178 - -
Aed7g2188 316 CDD SANT 16 61 IPR001005 -
Aed7g2188 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed7g2188 316 MobiDBLite consensus disorder prediction 213 233 - -
Aed7g2188 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed7g2188 316 MobiDBLite consensus disorder prediction 131 145 - -
Aed7g2188 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed7g2188 316 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Aed7g2188 316 PANTHER MYB TRANSCRIPTION FACTOR 1 286 - -
Aed7g2188 316 SMART sant 66 114 IPR001005 -
Aed7g2188 316 SMART sant 13 63 IPR001005 -
Aed7g2188 316 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed7g2188 316 CDD SANT 74 112 IPR001005 -
Aed7g2188 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed7g2188 316 Gene3D - 11 67 - -
Aed7g2188 316 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 286 - -
Aed7g2188 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2188 Aed-Chr7 24436112 24438431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2188 1 316 MYB Transcription Factor Family AT5G16600 46.821 1.04e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed7g2188 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2188 K09422 - gmx:100803624 480.33