Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2185 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGAAGTAACAGAGGGAGAGGTAGAGGAGGACGTGGCAGAGCCCATTCTGGCCGTGGACCAAGCGGGGCTCTTAATGGCGGAAGAATGGCTGGTGCTCTTAATAGTAGAAGAATGGCTGGTGCTGGTAATGGCAGAAGAACAACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGGCCATCGTCACCTAGGCCCTTTCCATGGCAGCATGATTTGTTAGAAGATAGCCTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAATTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGCTGAAGCGGTTTGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTCGTTTATACTAGAAGAAGTGATGCATTTGCTGCCCTTAAACGATATAATAATGTACTCTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATTCAGAATTGCCTATAAGTGCTCGGGTGAATGTCACTGGGGTGAATGGACGTAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGACATGCTGGAGGTCCTGCTATTCCTAATCGTGGTGCTGGTTGGGGACGTCGGGGTGGCCCAAGGAGTGGACGTGGTGGGGGTGGTGGGGGTGCTGGTCGAGGTCGTGGTCGTGGCAGGAGTGGTGGTGGAGGAGGAGGCCGAGGTCGTGGCCGTGGAGGAAAGGATAATGTTGAGAAGTCAGCGGAGGAACTTGACAAGGAGCTGGAGACCTATCACGCCGAGGCCATGAACATCTCTTGA 879 0.4994 MASSLDMSLDDRIKNRSNRGRGRGGRGRAHSGRGPSGALNGGRMAGALNSRRMAGAGNGRRTTGAVRRGPLMVNTRPSSPRPFPWQHDLLEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISARVNVTGVNGRRKRTVVMTPRGGHAGGPAIPNRGAGWGRRGGPRSGRGGGGGGAGRGRGRGRSGGGGGGRGRGRGGKDNVEKSAEELDKELETYHAEAMNIS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2185 292 SMART rrm1_1 107 179 IPR000504 GO:0003723
Aed7g2185 292 PANTHER THO COMPLEX SUBUNIT 4C 1 291 - -
Aed7g2185 292 MobiDBLite consensus disorder prediction 208 292 - -
Aed7g2185 292 Coils Coil 267 287 - -
Aed7g2185 292 SMART FoP_duplication_2 217 292 IPR025715 -
Aed7g2185 292 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 291 - -
Aed7g2185 292 CDD RRM_THOC4 106 180 - -
Aed7g2185 292 Gene3D - 101 183 IPR012677 -
Aed7g2185 292 MobiDBLite consensus disorder prediction 264 285 - -
Aed7g2185 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Aed7g2185 292 MobiDBLite consensus disorder prediction 1 44 - -
Aed7g2185 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Aed7g2185 292 SUPERFAMILY RNA-binding domain, RBD 48 180 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2185 Aed-Chr7 24396273 24400178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2185 105 186 Eukaryotic Initiation Factors Gene Family AT2G23350 36.585 2.45e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2185 K12881 - gmx:100801491 422.165