Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2170 ATGGGTTGCTTCTTTAGTGTTTCTTCAAAGATCAAAGCTGAGAGCCCTCCACGTAACGGTTTGAATTCAAAGGATGGTGGTAGCAAAGAAGAGAATGATTTGAGTGGTTTAAGCAGCAAGGTGTCCTCTTCAGCTATGCTTCTAATTCCTCAGAATGAGGAAGAGATATTGCAGGCCAGCAATTTGAAGAACTTCACATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGCCCGGATAGTATGGTGGGCGAAGGTGGGTTTGGTTGTGTGTTTAAGGGGTGGGTTGATGAGCATACACTTGTCCCTACTAAACCAGGGACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGGAAGCAACCAGGGACACATTGAATGGTTGACAGAAATTAACTACCTGGGGCAGCTCAGTCATCCTAATCTTGTGAAACTAATTGGTTACTCCTTAGAGGATGAACACCGGATTTTGGTGTATGAATTTGTGGCCAAGGGTAGTTTGGATAATCACTTGTTCAGGAGGGCTTCTTACTTTCAACCTCCCTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGATGTAATATATAGAGACTTCAAAACTTCTAATATCTTACTCGATTCTAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAGATGGACCGGAAGGTGATAAGAGCCATGTCTCTACAAGGGTAATGGGCACCTTTGGCTATGCAGCTCCTGAGTATATAACCACAGGTCACCTAAGCAAAAAGAGTGACATATACAGTTTTGGAGTTGTTCTTCTGGAACTTATGTCAGGGAAACGTTCACTGGACGAAAACAGGCCAAACGGGGAGCGTAGTTTAGTTGAATGGGCCAAACCACTCCTCACCAACAAACACAAGATATCACAAGTTATGGATGCACGCATAGAAGGCCAATACTCAAAGCGAGAAGCAAAGAGAATAGCTCACCTTGCAATTCAATGCCTATCTACAGAACAAAAACTTAGACCAAACATAGATGAGGTGGTTAGAACATTGGAACATCTTCACGATTCCAAAGACACTGACATCAATGGCCTTGGCTCAAGCAGCAGTGGTACTCCTAATCCAAGTTTATCTCCTTCTCCTCTCCATACATAG 1179 0.4309 MGCFFSVSSKIKAESPPRNGLNSKDGGSKEENDLSGLSSKVSSSAMLLIPQNEEEILQASNLKNFTFNELRTATRNFRPDSMVGEGGFGCVFKGWVDEHTLVPTKPGTGMVIAVKRLNQGSNQGHIEWLTEINYLGQLSHPNLVKLIGYSLEDEHRILVYEFVAKGSLDNHLFRRASYFQPPSWNIRMKVALDAAKGLAFLHSDEVDVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPEGDKSHVSTRVMGTFGYAAPEYITTGHLSKKSDIYSFGVVLLELMSGKRSLDENRPNGERSLVEWAKPLLTNKHKISQVMDARIEGQYSKREAKRIAHLAIQCLSTEQKLRPNIDEVVRTLEHLHDSKDTDINGLGSSSSGTPNPSLSPSPLHT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2170 392 CDD STKc_IRAK 83 362 - -
Aed7g2170 392 MobiDBLite consensus disorder prediction 363 392 - -
Aed7g2170 392 PANTHER OS01G0588500 PROTEIN-RELATED 27 367 - -
Aed7g2170 392 ProSitePatterns Protein kinases ATP-binding region signature. 83 115 IPR017441 GO:0005524
Aed7g2170 392 PANTHER KINASE 1B 27 367 - -
Aed7g2170 392 Gene3D Phosphorylase Kinase; domain 1 51 162 - -
Aed7g2170 392 Gene3D Transferase(Phosphotransferase) domain 1 163 375 - -
Aed7g2170 392 MobiDBLite consensus disorder prediction 1 36 - -
Aed7g2170 392 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Aed7g2170 392 MobiDBLite consensus disorder prediction 369 392 - -
Aed7g2170 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Aed7g2170 392 ProSiteProfiles Protein kinase domain profile. 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed7g2170 392 Pfam Protein tyrosine and serine/threonine kinase 81 359 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2170 Aed-Chr7 24228595 24232611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2170 53 371 Glycoside Hydrolase AT3G07070 45.171 5.18e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aed7g2170 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2170 - - gmx:106795104 677.937