Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2162 ATGGAGAGTCCCCATTCGCTTTCTCCCTCTTCCTCGTCTTGTTACTCCTCCGACGGCGTCGGTTTCGAGACGGAGGAGCCGCGGACGCCGCTGGCCGTGCGCCGCGCCCTGCAGCTCCTCAACTCCGGCGAGCCAGACCTGCGCCTCCAAGCCGCTCGCGACATCCGGCGCCTCACCAAAACGTCACAACGTTGTCGGCGCCAGTTATCCGAAGCTGTCGGTCCACTCGTTTCCATGCTCCGACTCGACTCGCCCGAGTCACACGAACCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAAGACGAAAAGAATAAAATCAATATTGTAGAGGCCGGGGCATTAGAACCAATAATTAGTTTCCTGGAGTCTCAAAATCTAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTTCAACCAACAAACCAATTATCAGTGCTTGTGGTGCCATTCCTCTTCTTGTGGAGATCCTAAGAGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAGCACACCCTGACAACCTCAGCATCATTCTTGAGACAAATCCAACTCCTTTCATAGTTGATCTTCTGAAAACCTGTAAAAAATCCTCAAAAACAGCTGAGAAATGCTGTGCTTTGATAGAATCCTTGGTGGACTACGACGAGGGCAGGACTGCCTTGACATCTGAGGAAGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCACTGTTGACAATGTGCCAAAGCGATCGATGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTGATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACACCAAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTACTGAGAGAATCTCCTTATCCAAGATCTGAAATTCAACCTGATACCCTTGAGAATATAGTATGCAACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAGGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGACATTTACAGCAAAGGGCTCTCGTATGCACCCCAAGTGATCTTCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTCAAAATGA 1164 0.4888 MESPHSLSPSSSSCYSSDGVGFETEEPRTPLAVRRALQLLNSGEPDLRLQAARDIRRLTKTSQRCRRQLSEAVGPLVSMLRLDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLESQNLNLQESATASLLTLSASSTNKPIISACGAIPLLVEILRDGSPQAKADAVMALSNLSAHPDNLSIILETNPTPFIVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2162 387 MobiDBLite consensus disorder prediction 1 19 - -
Aed7g2162 387 PANTHER U BOX DOMAIN-CONTAINING 12 370 - -
Aed7g2162 387 SMART arm_5 184 226 IPR000225 GO:0005515
Aed7g2162 387 SMART arm_5 143 183 IPR000225 GO:0005515
Aed7g2162 387 SMART arm_5 102 142 IPR000225 GO:0005515
Aed7g2162 387 SMART arm_5 61 100 IPR000225 GO:0005515
Aed7g2162 387 SMART arm_5 228 268 IPR000225 GO:0005515
Aed7g2162 387 MobiDBLite consensus disorder prediction 1 27 - -
Aed7g2162 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Aed7g2162 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Aed7g2162 387 Gene3D - 22 370 IPR011989 -
Aed7g2162 387 SUPERFAMILY ARM repeat 33 337 IPR016024 -
Aed7g2162 387 Pfam Armadillo/beta-catenin-like repeat 146 183 IPR000225 GO:0005515
Aed7g2162 387 Pfam Armadillo/beta-catenin-like repeat 103 140 IPR000225 GO:0005515
Aed7g2162 387 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2162 Aed-Chr7 24176110 24180066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2162 33 310 U-box Gene Family AT2G23140 34.643 7.76e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2162 - - gmx:100809684 670.233