Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2161 GCCTCTATAACACATTCTCCTCCTCTATGTGGCAGTGGCACCAAAGGGCATGCTTATAAGGGCACAAACTATCATCAGCTTGAAGAAGCAGAATCTCTTATTAATTTCAAAGGGTATAGCAATCTCATGCAAGGTGGTGAATCTTTTCTTAGCTTTCAGCACAACAGGCTGGTCCCTTATAACATGAAAGATAATAGTACTCAGAAAGAGTATTGTGTTTGGGAGAATAATTTGCATCAAGGCCATAGCCATTGGAATCAGACTAGTCCAAGAAGCACTAGTGACATGCACCTGGTAGAGAATCTCAATTGCTTTCAAACTGCTACTAGTGACTATAGTTCCATAGTTAATAATGCAAAAGAGAAGCAACATGGCCAAAGTTCATCTGGGTGGCTCTACTCAGCATCAACTATCCCTAATATTGATAAGAACATGAAAGCTGCCAAGAAACAATGCTCAACTGAGAGCAAAACGGCGCCAAAACATAAGTCAAGCCCGTCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATCGAAGAGAGAGGATAAGCGAGCGGTTGAAGATACTGCAAGAACTGGTGCCTAATGGCTCCAAGGTTGATTTGGTTACTATGCTGGAGAAAGCAGTTAGCTATGTAAAGTTTCTTCAACTGCAAGTGAAGGTGTTGGCTACTGATGAATTTTGGCCTGTCCAAGGTGGAAAGCCTCCTGATATTTCTCAAGTAAAGGAAGTAATCGATGCCATTCTTTCATCACAAAGAGAGACAAGTACTTCAAGCTCAAAGTAG 786 0.4198 ASITHSPPLCGSGTKGHAYKGTNYHQLEEAESLINFKGYSNLMQGGESFLSFQHNRLVPYNMKDNSTQKEYCVWENNLHQGHSHWNQTSPRSTSDMHLVENLNCFQTATSDYSSIVNNAKEKQHGQSSSGWLYSASTIPNIDKNMKAAKKQCSTESKTAPKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAVSYVKFLQLQVKVLATDEFWPVQGGKPPDISQVKEVIDAILSSQRETSTSSSK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2161 261 Gene3D - 161 223 IPR036638 GO:0046983
Aed7g2161 261 Pfam Helix-loop-helix DNA-binding domain 176 216 IPR011598 GO:0046983
Aed7g2161 261 CDD bHLH_AtIND_like 167 229 - -
Aed7g2161 261 SMART finulus 172 221 IPR011598 GO:0046983
Aed7g2161 261 MobiDBLite consensus disorder prediction 145 179 - -
Aed7g2161 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 225 IPR036638 GO:0046983
Aed7g2161 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Aed7g2161 261 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 252 - -
Aed7g2161 261 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2161 Aed-Chr7 24158512 24159966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2161 27 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 44.574 4.81e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed7g2161 HLH 8.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2161 - - gmx:100810010 396.356