Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2154 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAACTGGATTTCCAGGATTTATACCTGAGAGGCGAGCATTGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCTGCTCTGGCTGGTACTTGGTGTTTTCTTGATGGCAACAATGTTGAGAATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACAGAATTGAGGTTGCATATGCCACCATCAATAGCTCTTGCTAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACTGAGGAAGAGATAAATGCTCTTCCTGTCCACAACTATAAGGTTTCTGGTCCTCAAAGTGGTAGTTCCTCAATGCAACCAGCATCATCTTCCACTCCTGTTGAGAAGAAGCAAGATAATTCAAATGCGGTTGGGAGCATGAAAGCCTCTGATGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGATGTACTGCGTAGCTTACCTTGCTTGCACCAGTTTCACGCAAATTGCATCGATCCTTGGCTGCGCCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGTTTGGAGTGACAATGGACATAATGATATTATCGCGGACATGGTTTGA 825 0.4461 MSFVFRGTRADIETGFPGFIPERRALRVHATRPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHNYKVSGPQSGSSSMQPASSSTPVEKKQDNSNAVGSMKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSVWSDNGHNDIIADMV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2154 274 CDD RING-H2_PA-TM-RING 212 254 - -
Aed7g2154 274 MobiDBLite consensus disorder prediction 169 204 - -
Aed7g2154 274 PANTHER TARGET OF ERK KINASE MPK-1 1 268 - -
Aed7g2154 274 SUPERFAMILY RING/U-box 208 259 - -
Aed7g2154 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 268 - -
Aed7g2154 274 SMART ring_2 213 253 IPR001841 -
Aed7g2154 274 Pfam Ring finger domain 212 254 IPR001841 -
Aed7g2154 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 259 IPR013083 -
Aed7g2154 274 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Aed7g2154 274 MobiDBLite consensus disorder prediction 170 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2154 Aed-Chr7 24041526 24047982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2154 1 274 C3H Transcription Factor Family AT3G55530 75.725 1.68e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2154 K16283 - gmx:100777936 464.922