Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2153 ATGATGTCTTCCGGGACATCCTCGTACTGGTGCTACCGCTGCAGCCGATTCGTGCGCATGTGGCCCCAGGATACGGTGGTCTGTCCCGATTGCGACGGCGGTTTCATCGAAGAAATCGAACACCCGCCCCGCTCCGTCCACCTCGACCCCCTCCTCCGCCGCTTCCCCGCCGCCGCCATGTACATGATCGGCCAACGCCCCTCCTCCAACCACACCTCCCGCCCCGCCTCACTCCGCGGCACCCGCCGTAACGGAGGCGACCGCTCCGCCTTCAACCCCGTCATCGTCCTCCGCGGCGCCGCAGCCGCCGCCGAGGACGGAAGTCGCGGCTTTGAACTCTTCTACGACGACGGCGCTGGCGCCGGCCTCAGACCCTTGCCACCGAGCATGTCGGAATTTCTCCTCGGATCTGGTTTCGACAGGCTCTTGGAACAGCTTTCTCAGATTGAGATCAACGGTGTTGGAAGGTACGAGCACCCTCCTGCGTCAAAAGCAGCCGTTGATTCGTTACCAACCATCGAAATTGATGACACCCACTTGGCCATGGAGTCACACTGCGCTGTTTGCAAGGAAGCTTTTGAATTAGGAACCGCGGTGAGGGAAATGCCATGTAAGCATATATACCACCCTGAATGTATTTTACCGTGGCTCGCACTTCACAACTCTTGCCCGGTTTGTCGCCACGAATTACCCGCGGATACCCCTAATCCAAATCCAAATTCAAATCAAAATCCAACCCAAAATGGTACCTTGAACGAGGACGAGAATGTGGGGTTAACTATTTGGAGGTTGCCCGGTGGAGGGTTTGCAGTTGGGAGATTCTCCGGTGGGAGAAGAGGTGCTGAGAGAGAGCTTCCTGTGGTTTACACTGAAATGGATGGTGGGTTCAACAATGGGGGTGAACCCAGGAGGATTTCATGGTCTTCTAGAGGGAATAGAGGGAGAGAAAGTGGAGGCTTCAACAGGTTTTTCCGCAATTTGTTTGGTTGCTTCAGAGGAAGTAGAGAGTCTATGAGGCCAGGTTCCTCTCGTTCTAGTACTATGGATCCTTCGCCCACGCGCTCCCGCAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCATGGTAG 1113 0.5588 MMSSGTSSYWCYRCSRFVRMWPQDTVVCPDCDGGFIEEIEHPPRSVHLDPLLRRFPAAAMYMIGQRPSSNHTSRPASLRGTRRNGGDRSAFNPVIVLRGAAAAAEDGSRGFELFYDDGAGAGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGVGRYEHPPASKAAVDSLPTIEIDDTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADTPNPNPNSNQNPTQNGTLNEDENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGFNRFFRNLFGCFRGSRESMRPGSSRSSTMDPSPTRSRRTWSMDVNSGMRAW 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2153 370 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Aed7g2153 370 MobiDBLite consensus disorder prediction 338 362 - -
Aed7g2153 370 MobiDBLite consensus disorder prediction 234 253 - -
Aed7g2153 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 326 - -
Aed7g2153 370 Pfam Ring finger domain 185 227 IPR001841 -
Aed7g2153 370 MobiDBLite consensus disorder prediction 66 86 - -
Aed7g2153 370 SMART ring_2 186 226 IPR001841 -
Aed7g2153 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 3 326 - -
Aed7g2153 370 Pfam Protein of unknown function (DUF1117) 257 356 IPR010543 -
Aed7g2153 370 MobiDBLite consensus disorder prediction 232 253 - -
Aed7g2153 370 MobiDBLite consensus disorder prediction 335 370 - -
Aed7g2153 370 CDD RING-H2_RNF126_like 186 227 - -
Aed7g2153 370 SUPERFAMILY RING/U-box 166 241 - -
Aed7g2153 370 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Aed7g2153 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 233 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2153 Aed-Chr7 24033452 24034564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2153 125 236 C3H Transcription Factor Family AT5G01980 41.964 3.08e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2153 - K11982 gmx:100807324 644.039