Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2116 ATGGGGGACTTTGTTTCTTCATACACAGAGAGAAAGTCTGGTCTTATGAAATGGTTTGGCAAGATTTTCAACATTGGGTCCAGTACCAGTAAAGGAAGGGGTGGTGGTCGTCGTCTGCAGCAGCCTGTAGAGGAAAACATGGTTTGGCCAGCTCCATCTAGATCGTTGGATGACCGTGCTAGATCTCGGAAGGAGGAAGAGGATCTGGACCATGCAATTGAACTTTCTTTAGGCGAAAATTTCAAGAGACCAACTGGATATAGATGGCGCACAGGAACTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCATCTGCACATCCTCAATATAACCCTGTACCTTTTTATCCCCGGGGATATGGTGTGCCATCGCATAACAGAATGTGTGGAGGGTGCAACCAAGAGATACTCTATGGAAATTGTTTAGGAGTTGGTCATAGTTATTTTCATCCAAACTGCTTTCGGTGTCACTCGTGTCGTTACCCCATAACTGAGCGTGAGATACCAATAAATGCTTCTGGTTTGATTGAGTATAGATGCCACCCCTATTGGAACCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCGCGGGATGAAAGATACTATAGATTGGAAGATGGTCGAATTTTGTGCTTTGAATGCATGGAATCTGCTATAACGGACACTGGTGAATGTCAACCCCTTTATCATGCCATCAGAGACTATTATGAAGGAATGAATATGAAAATAGATCAACAAGTCCCAATGCTTCTCGTTGGAAGGGAAGCACTTAATGAAGCCATTGTTGGGGAGAAGAATGTATACAGGTGGCCAAGAATTGGAGGCCATCGATTAATAGGCATGAGATCTCAAGCTCAAAGGCTGCCTAGAAAGTGTGAAGTTACAGCAATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATACTTGCACATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCAGAACCTTAGTCCTGAAATAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGACGCAGAGGTGATGTCATGTGCTAGAACCATGCCATCAACATCAGCAGCAGCTTCTTCTTCTTCCTCCTCCTACTCTAACTTATCATCATCAAAGAAAGGTGCAAAATCTCACGTTGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCAGCCAATCAAGCTGTGAATAAATATGGTTTGCATTGCACTCTGGAGCATATTCGTTTGACTGGTCATTTCCCACTGTAA 1356 0.4299 MGDFVSSYTERKSGLMKWFGKIFNIGSSTSKGRGGGRRLQQPVEENMVWPAPSRSLDDRARSRKEEEDLDHAIELSLGENFKRPTGYRWRTGTDEDYAKALQDRMFSSAHPQYNPVPFYPRGYGVPSHNRMCGGCNQEILYGNCLGVGHSYFHPNCFRCHSCRYPITEREIPINASGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRDERYYRLEDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMKIDQQVPMLLVGREALNEAIVGEKNVYRWPRIGGHRLIGMRSQAQRLPRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYQNLSPEIEEGICQVLSYMWLDAEVMSCARTMPSTSAAASSSSSSYSNLSSSKKGAKSHVENKLGEFFMNQIANDSSPAYGGGFRAANQAVNKYGLHCTLEHIRLTGHFPL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2116 451 PANTHER PROTEIN DA1-RELATED 2 171 282 IPR045218 -
Aed7g2116 451 PANTHER PROTEIN DA1-RELATED 2 10 170 IPR045218 -
Aed7g2116 451 SMART lim_4 131 195 IPR001781 -
Aed7g2116 451 Pfam Protein DA1 281 446 IPR022087 -
Aed7g2116 451 ProSitePatterns LIM zinc-binding domain signature. 132 166 IPR001781 -
Aed7g2116 451 ProSiteProfiles LIM domain profile. 130 202 IPR001781 -
Aed7g2116 451 CDD LIM_DA1 132 184 - -
Aed7g2116 451 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 10 170 - -
Aed7g2116 451 Pfam LIM domain 132 177 IPR001781 -
Aed7g2116 451 Gene3D Cysteine Rich Protein 126 201 - -
Aed7g2116 451 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 171 282 - -
Aed7g2116 451 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 282 451 - -
Aed7g2116 451 PANTHER PROTEIN DA1-RELATED 2 282 451 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2116 Aed-Chr7 23719371 23724480 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed7g2116 DA1-like 6.7e-71 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2116 - - gmx:100798829 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2116 7 23719371 23724480 Aed3g2106 3 24947706 24951911 PCT