Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2091 ATGACATTCATAGTCCCTGAGTTGTGTCTCAATCTCAACTTCCTCTGCTTCTTGTTCTTCTTCTCTTTCGCCCTCACTTTATCTTCTTCACCTTTTCAGTTTAGAGCTTCAGATCACAACCGATCCACCATTCATTCACCACTTTCTCTTCACAAGGCAAATCTAACAAGAAAAGTAGTCTCTGAAGCCGATCCAGTGCCTTGTGAATTTGGAATTTGTGATCTAAAAGCCACAGCAATGTCTTTTATCGGTACCCAGCAAAAGTGCAAGGCTTGCGAGAAAACGGTTTATCCTGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCTTGCTTCAGGTGCTCTCACTGCAAAGGAACATTAAAGCTGAGCAACTATTCCTCAATGGAAGGTGTTCTTTACTGTAAGCCTCACTATGAGCAGCTCTTCAAAGAGACTGGCACCTTCAGCAAGAACTTCCAGTCACCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCGAGCATGTTTTCTGGCACCCAAGAAAAGTGTGCCACATGTGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAAGGGCAGGCCTATCACAAATCATGTTTCAAGTGTTCACATGGAGGATGTCCCATAACCCCATCGAATTATGCAGCCCTTGAGGGCATTTTGTATTGCAAGCACCATTTCTCACAGCTTTTTAAGGAGAAAGGGAGCTATAACCATCTTACCAAGTCTGCATCAATCAAACGGGCAGCAACGGCGGCAACAACAACAACAGCAGCAACAGTAACCTCTGTTCCAGAATCTTGA 840 0.4464 MTFIVPELCLNLNFLCFLFFFSFALTLSSSPFQFRASDHNRSTIHSPLSLHKANLTRKVVSEADPVPCEFGICDLKATAMSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFSKNFQSPAKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLTKSASIKRAATAATTTTAATVTSVPES 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2091 279 SMART lim_4 88 140 IPR001781 -
Aed7g2091 279 SMART lim_4 186 238 IPR001781 -
Aed7g2091 279 ProSitePatterns LIM zinc-binding domain signature. 89 123 IPR001781 -
Aed7g2091 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 115 155 - -
Aed7g2091 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 179 212 - -
Aed7g2091 279 Pfam LIM domain 187 242 IPR001781 -
Aed7g2091 279 Pfam LIM domain 89 144 IPR001781 -
Aed7g2091 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 82 114 - -
Aed7g2091 279 ProSiteProfiles LIM domain profile. 87 147 IPR001781 -
Aed7g2091 279 CDD LIM2_SF3 187 247 - -
Aed7g2091 279 CDD LIM1_SF3 85 147 - -
Aed7g2091 279 ProSiteProfiles LIM domain profile. 185 245 IPR001781 -
Aed7g2091 279 PANTHER OS06G0237300 PROTEIN 80 265 IPR045268 GO:0051015
Aed7g2091 279 Gene3D Cysteine Rich Protein 83 153 - -
Aed7g2091 279 Gene3D Cysteine Rich Protein 181 251 - -
Aed7g2091 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 252 - -
Aed7g2091 279 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 80 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2091 Aed-Chr7 23560873 23565242 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aed7g2091 LIM 6.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2091 K09377 - gmx:100786139 387.111