Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2083 ATGGAATTCGAGAAGACTCCATATCCAACTTGTTTTATGTCAAATTCAAATTCAAATTCAAAATGGTTTTCTGAAGAAGGGCACTACTACACATACAGAGAATGGACAAGAGAAGAGAATAAGAAGTTTGAAAGTGCCCTTGCCATATATGATAAGGATACCCCAGACAGATGGTTGAGAGTTGCAGCCATGCTCCCTGGAAAAACTGTCTATGATGTGATCAAACAGTACAGAGAATTGGAACAAGATGTTTGTGAAATAGAAGCAGGTAGGGTTCCAGTTCCTGGATATGATTATGATTATGATGCATGTAGAAAGAAGCCTTCAACTGTCATCAGGAGTTCTGATCAGGACAGGAAGAAAGGGGTTCCTTGGACAGAAGAGGAACACAGACGTTTTCTGATGGGACTTTTAAAGTATGGTAAAGGGGATTGGAGAAACATCTCTCGCAGTTTCGTGGTCACTAAAACTCCCACCCAAGTTGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAAGACAATAAAAGGAGACCTAGTATCCATGATATCACCATTCTTAATCACACATCAGATCAAGAGAAGCAGCCTCTTTTATTCAATGATGAGCAACAGAAGAAGCTCACTAGCATGCCAAATTATGATATGTTCATGTTGCAAGGCCAGGAATTCTATGAATGTGCTTTTCATGAGACTTATGCCAAGCTTAAAAACCAGGGTTTCAGAACAGCTTCTAGAGACTTCAACAAGGAAGCTATTTTTGGTATTCATGCACTGTAA 795 0.3975 MEFEKTPYPTCFMSNSNSNSKWFSEEGHYYTYREWTREENKKFESALAIYDKDTPDRWLRVAAMLPGKTVYDVIKQYRELEQDVCEIEAGRVPVPGYDYDYDACRKKPSTVIRSSDQDRKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRSFVVTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITILNHTSDQEKQPLLFNDEQQKKLTSMPNYDMFMLQGQEFYECAFHETYAKLKNQGFRTASRDFNKEAIFGIHAL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2083 264 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 16 206 - -
Aed7g2083 264 Pfam Myb-like DNA-binding domain 34 79 IPR001005 -
Aed7g2083 264 Pfam Myb-like DNA-binding domain 124 168 IPR001005 -
Aed7g2083 264 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Aed7g2083 264 SMART sant 31 83 IPR001005 -
Aed7g2083 264 SMART sant 121 171 IPR001005 -
Aed7g2083 264 ProSiteProfiles SANT domain profile. 125 173 IPR017884 -
Aed7g2083 264 SUPERFAMILY Homeodomain-like 119 173 IPR009057 -
Aed7g2083 264 Gene3D - 123 174 - -
Aed7g2083 264 Gene3D - 30 94 - -
Aed7g2083 264 SUPERFAMILY Homeodomain-like 33 87 IPR009057 -
Aed7g2083 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Aed7g2083 264 CDD SANT 124 168 IPR001005 -
Aed7g2083 264 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Aed7g2083 264 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 16 206 IPR043363 -
Aed7g2083 264 CDD SANT 34 80 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2083 Aed-Chr7 23523316 23524966 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed7g2083 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2083 - - gmx:100783469 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2083 7 23523316 23524966 Aed3g2131 3 25102943 25105270 PCT