Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed7g2070 | ATGGCGAAGAAGCTGACAAAAGCGCAGAAGAAGATCGCATACGATGTGAAGCTGTGCCGGCTTTTGGACAATTACACCCAAATCCTCGTGGTGGCTGCCGACAACGTCGGATCCAAGCAGCTTCAGAACATTCGACAAGGCCTACGTGGCGACTCCATCATTCTCATGGGAAAGAACACCATGATGAAGCGAACTATTAAGATCCATGCCGACAAAACCTCCAACAAAACCATCCTCAACCTTGTTCCCCTTCTAGTCGGTAACGTCGGCTTGATTTTCACCAAAGGTGACGTCAAGGAGGTTAAGGAAGTGGTTGCCAAGTACAAGGTGGGAGCTCCTGCTCGTGTAGGTTTGGTTGCACCTATTGATGTTGTTGTTCCCCCAGGAAACACAGGCCTCGATCCCTCTCAGACTTCTTTCTTTCAGGTGCTTAACATCCCTACCAAGATTAACAAGGGTACTGTAGAAATTGTCACCCCAGATCCTAGTAAATTTGTTGTAGCTGTTGCCGCACCTGCTACTAAATCAGGCTCTGCTCCAGCTGCTGCATCCAAGGTTGAAGAAAAGAAGGAAGAAGCCGCAGATGAATCCGATGATGACATGGGCTTCAGTTTGTTTGATTAA | 624 | 0.4792 | MAKKLTKAQKKIAYDVKLCRLLDNYTQILVVAADNVGSKQLQNIRQGLRGDSIILMGKNTMMKRTIKIHADKTSNKTILNLVPLLVGNVGLIFTKGDVKEVKEVVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIVTPDPSKFVVAVAAPATKSGSAPAAASKVEEKKEEAADESDDDMGFSLFD | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed7g2070 | 207 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN P0 | 161 | 207 | - | - | |
| Aed7g2070 | 207 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN P0 | 1 | 160 | - | - | |
| Aed7g2070 | 207 | MobiDBLite | consensus disorder prediction | 173 | 207 | - | - | |
| Aed7g2070 | 207 | SUPERFAMILY | Ribosomal protein L10-like | 9 | 135 | IPR043141 | - | |
| Aed7g2070 | 207 | Pfam | Ribosomal protein L10 | 8 | 108 | IPR001790 | - | |
| Aed7g2070 | 207 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN P0-1 | 161 | 207 | - | - | |
| Aed7g2070 | 207 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN P0-1 | 1 | 160 | - | - | |
| Aed7g2070 | 207 | Pfam | Insertion domain in 60S ribosomal protein L10P | 114 | 159 | IPR040637 | - | |
| Aed7g2070 | 207 | CDD | Ribosomal_P0_L10e | 9 | 160 | - | - | |
| Aed7g2070 | 207 | MobiDBLite | consensus disorder prediction | 193 | 207 | - | - | |
| Aed7g2070 | 207 | Gene3D | - | 5 | 149 | IPR043141 | - | |
| Aed7g2070 | 207 | Pfam | 60s Acidic ribosomal protein | 162 | 206 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed7g2070 | Aed-Chr7 | 23379426 | 23380992 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed7g2070 | 1 | 160 | Cytoplasmic Ribosomal Protein Gene Family | AT2G40010 | 82.500 | 1.75e-94 | 276 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed7g2070 | K02941 | - | gmx:100791968 | 265.388 |