Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2041 ATGCAGCCTCCTCGCCGCAAGAACAATACTCTCCCCAACTCAGAAACCTCAACAACAGCAACAATGAAAGGCAGAAGGAACAGTAGCGTTAGCATCTCCATTGTTGTGGTGGTGTTCTCCATATTCCTCTTTGGGGTGTTCATGTACCACGAGGACGTTAAGTCAATGGCCCAGTTCACATTCTTGAGGCCCAAGGCTCAAGAAATCCAACAAGAAACGATTTCCAACAACTTAAGAACTCAAGAACCGATTGATTTGAAGGCCGTTGTGGCAGAGGAGAAAGAAGAGTACGAGGAAGAAAAAGAAAATGATAATGAAAATGAAAATGAAGAGGTTGTTGTGTTGCCCCCAGAAGAGTGTGACTTGTTTACAGGGGAATGGGTTCTTGATAACGTGACACACCCTTTGTACAAAGAAGACCAATGCGAATTCTTAACCTCACAAGTCACCTGCGTCAGGAATGGAAGACGCGATTCTCTCTATCAGAACTGGAGATGGCAGCCCAGAGATTGCTCTTTGCCCAAGTTCAAACCAAGACTTTTGCTTGAGAAGCTTAGAGGGAAGAGGCTTATGTTTGTTGGAGACTCATTGAACAGAAACCAATGGGAATCAATGATTTGTCTTGTCCAATCCGTTGTTCCTCAAGGCAAAAAAAACTTGAGCAAGGATGGTTCTCTTTCCATCTTCACAATCGAGGATTACAATGCTACGGTGGAGTTCTACTGGGCACCGTTCCTTGTGGAGTCAAATTCAGATGATCCAAAGATGCACAGCATATTGAACCGTATCATCATGCCTGAATCAATCGAAAAGCATGCTGTGAATTGGAAAAATGTGGACTATCTGATCTTTAACACCTACATATGGTGGATGAATACTGCCACTATGAAAGTCTTACGAGGATCGTTTGATGAAGGATCAACGGAGTACGATGAAGTCCCTCGTCCAATAGCATATGGAAGAGTCCTCAACACGTGGTCTAAATGGGTGGAAGACAACATTGATCCAAATCGCACCAAAGTTTTCTTCTCCAGCATGTCCCCTCTTCATATTAATAAGCTTCAGAGTGATGCTTTGCGAGAAGCCATCTCCGGAATCATGACCGATACCAAGGATAAGAATCGCAAATTTGTTGAGACCATTGAACTCCAGATTGGTTTGAAGAACTACGATCCTCAGAAAGACAAGCGTTTCAGTGGCTCTGTCAAGCTGCCCCACATCCCTCGCCCCAAGATGAAAATCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCAGAGAAGATAGGATTGGACTACATGGATGTGGAAGCCTTGAAGAAGCTAAACAAAAATAAGAAGTTGGTGAAGAAACTAGCCAAAAAGTACCATGCCTTTTTAGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGCCCTGGTCTCAACAAGGCAGGCATGTCTTGGAAGTTCCCTACACTTGTTACTCACCAGGAATCTCTTGAATCAAAGGTTAATGAGACCAAGGCCATGGTCAAATTTCAACTTAAGAAGGTGCTCTGTATGGGAGTAGCAGTGGGCAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTCAACTTCCTGGTATCCTTGTTGAAAAAGAATTGGCAAAATGTTAGATGTCTGTATCTGAAGAGTACCATGGGGAAATCTTACCGTGTCTTTTAA 1710 0.4333 MQPPRRKNNTLPNSETSTTATMKGRRNSSVSISIVVVVFSIFLFGVFMYHEDVKSMAQFTFLRPKAQEIQQETISNNLRTQEPIDLKAVVAEEKEEYEEEKENDNENENEEVVVLPPEECDLFTGEWVLDNVTHPLYKEDQCEFLTSQVTCVRNGRRDSLYQNWRWQPRDCSLPKFKPRLLLEKLRGKRLMFVGDSLNRNQWESMICLVQSVVPQGKKNLSKDGSLSIFTIEDYNATVEFYWAPFLVESNSDDPKMHSILNRIIMPESIEKHAVNWKNVDYLIFNTYIWWMNTATMKVLRGSFDEGSTEYDEVPRPIAYGRVLNTWSKWVEDNIDPNRTKVFFSSMSPLHINKLQSDALREAISGIMTDTKDKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGMSWKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2041 569 MobiDBLite consensus disorder prediction 1 24 - -
Aed7g2041 569 Pfam PMR5 N terminal Domain 118 171 IPR025846 -
Aed7g2041 569 SUPERFAMILY Ribosomal protein L1 354 569 IPR023674 -
Aed7g2041 569 PANTHER PMR5/CAS1P GDSL/SGNH-LIKE ACYL-ESTERASE FAMILY PROTEIN 104 352 - -
Aed7g2041 569 Coils Coil 87 111 - -
Aed7g2041 569 Pfam Ribosomal protein L1p/L10e family 373 563 IPR028364 -
Aed7g2041 569 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 173 355 IPR026057 GO:0016740
Aed7g2041 569 Gene3D - 415 507 IPR016095 -
Aed7g2041 569 Gene3D - 371 564 - -
Aed7g2041 569 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 104 352 IPR029962 GO:0016413
Aed7g2041 569 CDD Ribosomal_L1 359 568 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2041 Aed-Chr7 23158331 23165983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2041 351 569 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 86.301 7.35e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2041 - - gmx:100785597 597.43