Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2023 ATGGATTCCGAGTTTCCCAACAAAGCTTTAACGACCACGCGTTTTTCCGACCTGAATCCGCCGCTCTCCGAACCGGTTCTACTAGCCCTATCACAGTCCGGTTTCGAGTTCTGCACGCCCGTCCAAGCCGCCACCATTCCTTTGCTCTGCAGCTTCAAGGACGTCGCCGTCGACGCCGCCACCGGTTCTGGCAAAACCCTAGCTTTCCTCGTTCCTCTCGTCGAGATTCTACGTCGCTCCTCTTCTAATCCCAAGCCTCACCAGGTGCTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACTCAAATATATAATGTTGCACAACCTTTTATTTCGTCATTGGTGAATGTTAAGCCCATGCTCCTCGTTGGTGGAGCAGAAGTTAAAGCAGACTTAAAGAAAATAGAGGAGGAAGGAGCAAATGTATTGATTGGCACGCCTGGCCGCCTATATGACATCATGAATCGGTTGGATATCTTAGATCTTAAAAACCTTGAGATTTTGATTTTGGATGAAGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATATCTCTCTTGCCTAAGCTTCGTAGAACTGGTCTGTTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAGGCTGGATTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGAAAATGGTGATGCATCATCAAAACAACAAGAATCTTCAAAAACACCTTCAGGACTTCTTATTGAGTACTTGGAATGCGAAGCAGATAAGAAGCCATCACAGCTAGTAGATATCATTATTAAGAATCACACAAAAAAAATTATTATATATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAGCTGTCCTTCCTTGTCTTTCTGTTTTGAAAGGCTTCCCCTTGATTCCCCTACATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCAAATGGAATTCTTCTCTGTACGGATGTTGCAGCACGTGGACTTGACATACCGGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCCAACGTTTTCGTACATAGAGTAGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCCTGCATATAAGAAGAATTCCTCTTCAAGAGAGAATATGTTCTGATGATGCATCCAATGTTGTTCCTCAGATCCGTTCTGCTGCAAAAAAAGATCGTGATGTCATGGAAAAGGGAACTAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCCTATATATTTAGGGATAAATCACGGGAGAAACAAAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCGAAGAAAACCCCAAATGCATCCACTGTCACGCGGAAGAAAACAGCCCGACAGAGACGTGCTAAGCAGACAATAGAAGATGAGGAAGAGTTGACTCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGAATGAATATGCCAAGTTGACGGGCACTGAGGAATTACTTTAA 1617 0.431 MDSEFPNKALTTTRFSDLNPPLSEPVLLALSQSGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFLVPLVEILRRSSSNPKPHQVLGIIISPTRELSTQIYNVAQPFISSLVNVKPMLLVGGAEVKADLKKIEEEGANVLIGTPGRLYDIMNRLDILDLKNLEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENGDASSKQQESSKTPSGLLIEYLECEADKKPSQLVDIIIKNHTKKIIIYFMTCACVDYWGAVLPCLSVLKGFPLIPLHGKMKQSAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLHIRRIPLQERICSDDASNVVPQIRSAAKKDRDVMEKGTKAFVSYIRAYKEHHCSYIFRDKSREKQRKKNLQAKKEAKEKEPKPKKTPNASTVTRKKTARQRRAKQTIEDEEELTQEYRLLKKLKKGTIDENEYAKLTGTEELL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2023 538 Coils Coil 455 475 - -
Aed7g2023 538 MobiDBLite consensus disorder prediction 454 480 - -
Aed7g2023 538 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Aed7g2023 538 SMART helicmild6 293 375 IPR001650 -
Aed7g2023 538 MobiDBLite consensus disorder prediction 228 248 - -
Aed7g2023 538 Gene3D - 3 227 IPR027417 -
Aed7g2023 538 CDD SF2_C_DEAD 254 384 - -
Aed7g2023 538 Pfam Domain of unknown function (DUF4217) 416 453 IPR025313 -
Aed7g2023 538 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 26 536 - -
Aed7g2023 538 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Aed7g2023 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Aed7g2023 538 SMART DUF4217_3 413 460 IPR025313 -
Aed7g2023 538 CDD DEADc_DDX55 26 224 - -
Aed7g2023 538 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Aed7g2023 538 PANTHER RNA HELICASE 26 536 - -
Aed7g2023 538 Coils Coil 498 518 - -
Aed7g2023 538 SMART ultradead3 34 243 IPR014001 -
Aed7g2023 538 Gene3D - 254 505 IPR027417 -
Aed7g2023 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Aed7g2023 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Aed7g2023 538 MobiDBLite consensus disorder prediction 454 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2023 Aed-Chr7 23014443 23019286 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2023 22 402 Eukaryotic Initiation Factors Gene Family AT3G13920 29.843 4.64e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2023 K14809 - gmx:100801482 936.791