Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2020 ATGGTGCATAGAAAAAGACATTTACATAAACAGAAGCATCCTTTCCATGATTATCCATTCGAGACATTTTTGAGTGGGACATGGAAAGCTGTGGAGCTCATAAAAATTGAGTCAGGAAAGACAACCATGCACTTTGTAGATAATCACCAAATGGCCCTTGAGAAAGGCCTCTTTTCAGACGTTCGAATAAGATCAAGGAAAGCTACTTCATCAGATTGCTCCTGCTTCTTGCGAACTGGCATTGACATGTTATCACCCACTTTGCCGGTGTGGATTGATGCTAAAATAAGTTCCATACAGAGAAAACCGCATAATCCAGAGTGCACATGTGAGTACTATGTAAACTGCTATGTTAATCAAGGTTCACTTGGTACAGAGATGAGAACTCTTTTGAAGGAGGTTAAAGTAGTTGGAATAAATGAAATTGCCATCCTCCAAAAGCTTGAGCGTAATTGTAGTGAAGGCAAATTCTATCGATGGAAATCATCTGAAAACTGCTCCACAGTGCCAGACACTAAACTGTTCTTGGGAAAGTTTTTATCTGACCTTTCATGGTTTGTTGTTACATCTGTTTTAAAGAAGTTTTCATTCGGTGTAAGATCTGTGGAAAACAAGATTGTGTATCAAATTTTAGATAGTGATGCCACTGTCTCTTCATTGAACATGGATTCTGAAATAAGTGTTGTGAACTTTGAAGTGGGCGAAGGCGGCACGTCATTGCCCGTTTGCCATCATCTTATGATGCTGCTGAGGACTTACGATGATCCAAACGTAGGAACATACAACCTGAACGTTACTCTGGTTGTGATAAATGTTGGTAGTTTTCGAAGCTGGCCATACAAGTTAAACAAAAGGAAAGATGACTCCGACGACAGTAGTCAAAATGTCAATGAAATGAGTTCTTGCCGGGAGGTTTTGGAGAACCATGGGAGGAATAAGAAGAAGGAATTGAAGTCAGGTGAGGAGGACAATAAAACTCATCTTGCCGGTGTTCCTCTTCTTGAACAAGGTGATTCATTGGCCCTTGAGTATCATCCTCTCAATGACAAGGTTACTAGTGAAAGTAATGCATATTACAGCAACCCTGAGCTTAAGAAGAAAAAAATGGTTGGTCTGGAAGATGATGTAGATTTTGATCCTGGAAGGGAAGGCATAAAGTCCAATAAAGGAGTGGTAGAGAAAAGACATGGTTCATGGTATTCAGGAAGCAGAAGCTATCATAACGCAGATATAAAGACAAGCTTAAATGCAGTTGCGTACAAGGAAATGATAGATTCATACTTGGAGGATGTTAACAGAACAACAACGATAGAAGAGCCACCAGTAGTGGATCAGTGCAATGAAATAAGCAACTTTGGGCAAAACAAGGAAGCAGAAATACCTCAAAGTGAGGATGAGGAACAACTATCTGAGGAAGATATGTTGTATAAAGAACTGGACATGGCACTGGCATTAAAACCTAAATACACTTGTCCACATGTCTTCATACTGAATGAAGAAATTGGACTTTATTGCTACAGATGTGGACATGTGAAAACCGAGATAAAATATATTACGCCACCCTTTATTGAAAGGAAACGCTCAGTGCAGCACCAAGAGGAAAAGCAATGCAATGGAAAAGAGTCGGAGGCAAAGGCTGATCAAGATGATAATTTCCATCTTCCCTCAACTCATGCTCCTAGTGATGAACTTATTTCTATGGAACATGACAACGTTTGGAAGTTCATTCCTGAAATCAGAGAAAAGATGCATCCCCACCAAACAAAAGCTTTCGAATTCCTTTGGCAAAATATTGGAGGGTCAATGGAACCAACACTTATGGATGCAGAATCCAAAAGTAGAGGAGGTTGTGTGATATCTCATGCTCCCGGAGCTGGTAAAACCTTTCTCATAATTGCATTTCTCATAAGCTATTTAAAGCTGTTCCCAGGCAAGAAGCCTCTTATCCTTGCACCGAAAACAACGCTTCACACATGGTGCAAAGAATTCAACAAATGGGGAATTTCAATGCCGGTATATTTGATTCATGGGCGTGGTGGAACTCAGAAAGATACCGAGTCAAATTCAATCGTTCTTCCTGGTATTCCAAATCCGAACAAAGATGCCCAGCATGTTCTGAACTGCTTGGACAAGATACAAAAGTGGCAAGCACACCCAAGTGTTTTGATAATGAGTTACACGTCCTTTTTAACATTAATGAGAGAGGGTTCGGAGTTTGCATACGAAAAATATATGGCTAAAGCAATGAGGGAAGGTCCTGGGGTTATGATACTTGATGAAGGACACAATCCCAGAAGCACCAAGTCAAGGCTAAGAAAAGGGTTGATGAAAGTGGAAACGGATCTCAGAATATTACTTTCCGGTACATTATTTCAGAACAATTTCGAAGAATACTTCAACACGCTTTGTTTGGCAAGACCAAATTTTATTTATGAAGTGCTGGACAAATTAGACCCCAGAAGGAGAAGCAAAATGACAGAAAAGGCACGCCATTTGCTAGAGTCACAAGCCAGAAAATTATTCATAGATAACATTGCTAAGAAAATTGACTCGGTTGGAAATGAGAGGATGCACGGTCTAAACATGTTGAGAGATGTCACAAATGGTTTTATAGATAGTGCAAATTTTGATAGTGCCCCTGGTTTGCAAATCTACACGTTGCTGATGAATATAACTGACATGCAGCGTGGGATTTTGTCGAGACTGCACACAAGAATGAACGAGTGCAACGGTTACCCCATGGAAGTGGAGCTTTTGATAACTCTTGGATCAATACATCCATGGTTGGTTAAAACAGTCTCATGTGCAAATAAGTCTTTCACTGAGGACGAACTGAAGCGGCTAGACGAATGTAAGTTTGAATTGAAAGTTGGGTCAAAAGTTAAATTTGTTTTGAGCCTTGTTTACCGTGTTATGGAGAGGGAGAAAAGTTATTTGGGACGATCTTCAAATGGGAAAAAGACAGAAATTCTGTTGCTTAATGGGGAACTAGACCTCTTTGAACGTGGGAAAGTGATTGATAAGTTTGAGGACCCTAGAGGAGCATCAAAGCTTGTGCTGAAGGCATTATTTAACAGCAGCTTCAAGAAATGGAACCCTTCAAAGACAAAGCAGGCTATTGCAAGGGCCTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTATCAGCTCTTGGCAGCAGGAACATTAGAGGAAGATAAGTACAAAAGAACAACTTGGAAAGAGTGGGTTTCTAGCATGATTTTCAGTGAGGCTGTTAAGGAGAATCCTTTACATTCGCAAGCAGAGAGGATTGAAGATGAAACACTGAGGGAAATGGTTGAGGAGGACAAGTCTAAATTAATTCATATGATACTAAGGAATGAAAAGGCTTCAACAAACTAA 3384 0.4016 MVHRKRHLHKQKHPFHDYPFETFLSGTWKAVELIKIESGKTTMHFVDNHQMALEKGLFSDVRIRSRKATSSDCSCFLRTGIDMLSPTLPVWIDAKISSIQRKPHNPECTCEYYVNCYVNQGSLGTEMRTLLKEVKVVGINEIAILQKLERNCSEGKFYRWKSSENCSTVPDTKLFLGKFLSDLSWFVVTSVLKKFSFGVRSVENKIVYQILDSDATVSSLNMDSEISVVNFEVGEGGTSLPVCHHLMMLLRTYDDPNVGTYNLNVTLVVINVGSFRSWPYKLNKRKDDSDDSSQNVNEMSSCREVLENHGRNKKKELKSGEEDNKTHLAGVPLLEQGDSLALEYHPLNDKVTSESNAYYSNPELKKKKMVGLEDDVDFDPGREGIKSNKGVVEKRHGSWYSGSRSYHNADIKTSLNAVAYKEMIDSYLEDVNRTTTIEEPPVVDQCNEISNFGQNKEAEIPQSEDEEQLSEEDMLYKELDMALALKPKYTCPHVFILNEEIGLYCYRCGHVKTEIKYITPPFIERKRSVQHQEEKQCNGKESEAKADQDDNFHLPSTHAPSDELISMEHDNVWKFIPEIREKMHPHQTKAFEFLWQNIGGSMEPTLMDAESKSRGGCVISHAPGAGKTFLIIAFLISYLKLFPGKKPLILAPKTTLHTWCKEFNKWGISMPVYLIHGRGGTQKDTESNSIVLPGIPNPNKDAQHVLNCLDKIQKWQAHPSVLIMSYTSFLTLMREGSEFAYEKYMAKAMREGPGVMILDEGHNPRSTKSRLRKGLMKVETDLRILLSGTLFQNNFEEYFNTLCLARPNFIYEVLDKLDPRRRSKMTEKARHLLESQARKLFIDNIAKKIDSVGNERMHGLNMLRDVTNGFIDSANFDSAPGLQIYTLLMNITDMQRGILSRLHTRMNECNGYPMEVELLITLGSIHPWLVKTVSCANKSFTEDELKRLDECKFELKVGSKVKFVLSLVYRVMEREKSYLGRSSNGKKTEILLLNGELDLFERGKVIDKFEDPRGASKLVLKALFNSSFKKWNPSKTKQAIARAFRPGQQKMVYVYQLLAAGTLEEDKYKRTTWKEWVSSMIFSEAVKENPLHSQAERIEDETLREMVEEDKSKLIHMILRNEKASTN 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2020 1127 SMART ultradead3 579 813 IPR014001 -
Aed7g2020 1127 Gene3D - 557 846 IPR038718 -
Aed7g2020 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 811 IPR027417 -
Aed7g2020 1127 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1126 IPR044567 GO:0080188
Aed7g2020 1127 Gene3D - 1080 1112 - -
Aed7g2020 1127 Pfam SNF2-related domain 605 835 IPR000330 GO:0005524|GO:0140658
Aed7g2020 1127 MobiDBLite consensus disorder prediction 285 325 - -
Aed7g2020 1127 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 608 808 IPR014001 -
Aed7g2020 1127 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1126 - -
Aed7g2020 1127 MobiDBLite consensus disorder prediction 528 552 - -
Aed7g2020 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 753 1086 IPR027417 -
Aed7g2020 1127 MobiDBLite consensus disorder prediction 304 325 - -
Aed7g2020 1127 Gene3D - 1029 1079 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2020 Aed-Chr7 22984498 22989049 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed7g2020 SNF2_N 7.8e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g2020 K10875 - gmx:100781856 1578.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2020 7 22984498 22989049 Aed3g2195 3 25539561 25545587 PCT