Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1988 ATGGCCGATCACTCAGATTCTTCTCCTCTCGTTCCTCCCCTTCCCCTCACTGACCCTTCCGAGATCGACCTCGAAGCCGGTCCCTCCGAACAAATCCAGTGCCGAATTTGTCTCGAAACTGACGGTAGAGATTTCATAGCCCCTTGTAAGTGCAAAGGTACATCAAAATATGTGCATCGAGAATGTTTGGATCATTGGCGAGCAATTAAGGAAGGGTTTGCCTTTGCACACTGCACTACATGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCCTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATTTTTCTGTCTGTCCAGCTTGTCATTTCTTCACTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTATTGTTTTTCGCTTTGCTTGGCCTTTCTGGGTGCTTCATTACCTGTTATGATCGGAGAGTTCGTAATGATTTAGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCATTTGCCAGGCACTCTTTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGTTGTTTGGGGGGTGCTGGGGAAGCAGGGCTACCATTATTATTCATTATGGCTTTGGTTGTTCTGGGACTTTTTACTGTAATTGGGATATTCTACAGTGTATTGGTTGCTACCATGGTAGGTCAACGGATATGGCAACGTCATTATCACATACTCGCAAAAAGGATGTTAACAAAGGAGTATGTGGTTGAAGACGTTGATGGAGAACTGACAGGATCTGATTGGTCTCCCCCGGCTCTCCCATCCGAGCATGTTCAGCAGTTGAAAACATTGGGCCTATTATGA 972 0.4455 MADHSDSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLSVQLVISSLAYLVYLIDGYQQYWLRLLWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALVVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGELTGSDWSPPALPSEHVQQLKTLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1988 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Aed7g1988 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 323 - -
Aed7g1988 323 SUPERFAMILY RING/U-box 29 86 - -
Aed7g1988 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Aed7g1988 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Aed7g1988 323 PANTHER BNAA04G12620D PROTEIN 1 323 - -
Aed7g1988 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Aed7g1988 323 SMART ringv_2 33 82 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1988 Aed-Chr7 22760734 22765756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1988 1 323 C3H Transcription Factor Family AT2G22120 86.111 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1988 - - gmx:100791777 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2038 5 22975465 22979131 Aed7g1988 7 22760734 22765756 PCT