Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1986 ATGAATAAGGTTTGTGGGAAAATGATAATGCTGTTGGCATCTCTGCTGATAGAACTCATCATTCTCATTCAGAAGCTAAGGACTTGTTCATCATCATCGCGTCCAATCAGCACCCGCCAATACCTCAAACTCATCGAGAAGAAGAACCCCACCATTTGCTACACCACCAAAGCAGAGCACGCTACAGAGTGCAGGGTATGCTTGTCCGAATTCGAAGAAGGGGAGAAGGTGAGGAAGCTCACATGCCAACACACGTTTCATAGGGACTGTTTGGACACGTGGTTGCAACAGTATTGGGCAACGTGCCCGCTTTGTCGGGTACAAGTGGTTCCTGAAGAGGTTGTCTTCAAGCACCGTCAGCACCAGAATCAAGCTCAGGCGCCACCCTCTAATGACGAGAATATTCTCTATCTTTTTTCCGCATTTCGTAGTCGCAACAGATATCTCTGA 450 0.4756 MNKVCGKMIMLLASLLIELIILIQKLRTCSSSSRPISTRQYLKLIEKKNPTICYTTKAEHATECRVCLSEFEEGEKVRKLTCQHTFHRDCLDTWLQQYWATCPLCRVQVVPEEVVFKHRQHQNQAQAPPSNDENILYLFSAFRSRNRYL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1986 149 SUPERFAMILY RING/U-box 45 112 - -
Aed7g1986 149 SMART ring_2 64 105 IPR001841 -
Aed7g1986 149 Pfam Ring finger domain 63 106 IPR001841 -
Aed7g1986 149 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 146 - -
Aed7g1986 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 111 IPR013083 -
Aed7g1986 149 CDD mRING-H2-C3H2C2D_ZSWM2 63 106 - -
Aed7g1986 149 PANTHER - 1 146 - -
Aed7g1986 149 ProSiteProfiles Zinc finger RING-type profile. 64 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1986 Aed-Chr7 22756059 22756508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1986 62 117 C3H Transcription Factor Family AT1G15100 53.571 8.92e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1986 K16282 - gmx:102668078 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2036 5 22956021 22956497 Aed7g1986 7 22756059 22756508 PCT